View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0329_low_15 (Length: 313)
Name: NF0329_low_15
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0329_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3639685 - 3639906
Alignment:
| Q |
1 |
tcaaagtgctttcggtggttggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcat |
100 |
Q |
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| T |
3639685 |
tcaaagtgctttcggtggtgggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcat |
3639784 |
T |
|
| Q |
101 |
ttggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctagaaaggtctagaagtaaatgagagacttggc |
200 |
Q |
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| T |
3639785 |
ttggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctagaaaggtctagaagtaaatgagagacttggc |
3639884 |
T |
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| Q |
201 |
attaaatgtaagtagataatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3639885 |
attaaatgtaagtagataatat |
3639906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 3648517 - 3648583
Alignment:
| Q |
38 |
gtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcatttgg |
104 |
Q |
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| T |
3648517 |
gtgctagggttgaccctgttgaatattgtgaagcctaattcttgtaatcacctttcatatcatttgg |
3648583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 43145841 - 43145913
Alignment:
| Q |
99 |
atttggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctaga |
171 |
Q |
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||||||||||||| ||||| ||||||| | |||||||| | || | | ||||||||||||||||||||||| |
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| T |
43145841 |
atttggtccattggcctaatcaagtgttggatccattttggattaagtaatgtagtccaaagaaagttctaga |
43145913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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