View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0329_low_2 (Length: 446)
Name: NF0329_low_2
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0329_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 14212106 - 14212512
Alignment:
| Q |
11 |
tatactcttcaccacatttttctaatgtttgcaatttcatcttagaactttcttcgcggnnnnnnnggccgagtctatgatttctgcttgcatgatcaaa |
110 |
Q |
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| T |
14212106 |
tatactcttcaccacatttttctaatgtttgcaatttcatcttagaactttcttcgcggtttttcgggccgagtttatgatttctgcttgcatgatcaaa |
14212205 |
T |
|
| Q |
111 |
gagatagaattctagtggctgcaatgcttcttcgattaataaatcctcgacacggcaatttaaatcaatactcattttttctatccgtttcgagatcgat |
210 |
Q |
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| T |
14212206 |
gagatggaattctagtggctgcaatgcttcttcgattaataaatcctcgacacggcaatttaaatcaatactcattttttctatccgtttcgagatcgat |
14212305 |
T |
|
| Q |
211 |
aaagcaacaacatcttttgtgaatctgcttgaatcaaggttaattatgttttttgcattcagctgttcttgcatcacatcttgaggatccattgggtgaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14212306 |
aaagcaacaacatcttttgtgaatctgcttgaatcaaggttaattatgttttttgaactcagctgttcttgcatcacatcttgaggatccattgggtgaa |
14212405 |
T |
|
| Q |
311 |
ccttcccatactgccactaaaatatttaagagaaacaaaagtggcttattttatactgtaaaaaatttgaaagtgtttcaataaaatgtattattaataa |
410 |
Q |
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| T |
14212406 |
ccttcccatactgccactaaaatatttaagagaaacaaaagtggcttattttatactgtaaaaaatttgaaagtgtttcaataaaatgtattattaatta |
14212505 |
T |
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| Q |
411 |
tgctaat |
417 |
Q |
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| T |
14212506 |
tgctaat |
14212512 |
T |
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