View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0329_low_23 (Length: 284)

Name: NF0329_low_23
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0329_low_23
NF0329_low_23
[»] chr1 (1 HSPs)
chr1 (93-239)||(10299293-10299439)
[»] chr3 (3 HSPs)
chr3 (93-234)||(40204135-40204276)
chr3 (93-234)||(40208268-40208409)
chr3 (93-234)||(40200634-40200775)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 10299439 - 10299293
Alignment:
93 caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
10299439 caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggagatctt 10299340  T
193 tttctctcaaattcctgactttgatcagttatggtggctctctgctc 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
10299339 tttctctcaaattcctgactttgatcagttatggtggctctctgctc 10299293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 40204135 - 40204276
Alignment:
93 caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt 192  Q
    ||||| ||||||| ||||||||||| || |||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||   ||| | ||  |    
40204135 caattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattat 40204234  T
193 tttctctcaaattcctgactttgatcagttatggtggctctc 234  Q
     |||||||||||||| || ||||||||  |||||||||||||    
40204235 attctctcaaattccagattttgatcaaatatggtggctctc 40204276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 40208268 - 40208409
Alignment:
93 caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt 192  Q
    ||||| ||||||| ||||||||||| || |||||||||||| ||||||| ||||||||  | ||||||||||||||||||||||||   ||| | ||  |    
40208268 caattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattat 40208367  T
193 tttctctcaaattcctgactttgatcagttatggtggctctc 234  Q
     |||||||||||||| || |||||||| || |||||||||||    
40208368 attctctcaaattccagattttgatcaattgtggtggctctc 40208409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 40200634 - 40200775
Alignment:
93 caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt 192  Q
    ||||| ||||||| ||||||||||| || ||||| |||||| ||||||| ||||||||  | ||||||||||||||||||||||||   ||  | ||  |    
40200634 caattgaaaggtcaaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattat 40200733  T
193 tttctctcaaattcctgactttgatcagttatggtggctctc 234  Q
     |||||||||||||| || |||||||| ||||||||||||||    
40200734 attctctcaaattccagattttgatcaattatggtggctctc 40200775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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