View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0329_low_25 (Length: 269)

Name: NF0329_low_25
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0329_low_25
NF0329_low_25
[»] chr7 (2 HSPs)
chr7 (32-246)||(866797-867011)
chr7 (32-246)||(1228074-1228288)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 866797 - 867011
Alignment:
32 gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
866797 gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga 866896  T
132 ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatgatgt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
866897 ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatgatga 866996  T
232 ggttgaagatgatga 246  Q
    |||||||||||||||    
866997 ggttgaagatgatga 867011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 1228074 - 1228288
Alignment:
32 gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1228074 gagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccgatgattaaggtggttgtgacggtggtggaagagaggtcga 1228173  T
132 ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggatgatgatgt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
1228174 ggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgtagggtttttgagagatctggaggaggaggaggatgatga 1228273  T
232 ggttgaagatgatga 246  Q
    |||||||||||||||    
1228274 ggttgaagatgatga 1228288  T

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