View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0329_low_26 (Length: 267)

Name: NF0329_low_26
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0329_low_26
NF0329_low_26
[»] chr3 (2 HSPs)
chr3 (39-230)||(19200418-19200609)
chr3 (42-222)||(21254826-21255005)
[»] chr6 (3 HSPs)
chr6 (40-133)||(17820810-17820903)
chr6 (57-115)||(20114032-20114090)
chr6 (78-131)||(23089037-23089090)
[»] chr5 (4 HSPs)
chr5 (72-222)||(10176709-10176855)
chr5 (66-131)||(26645658-26645723)
chr5 (57-131)||(36734399-36734470)
chr5 (72-136)||(18224106-18224170)
[»] chr4 (2 HSPs)
chr4 (39-198)||(11092863-11093019)
chr4 (165-222)||(11922980-11923037)
[»] chr7 (2 HSPs)
chr7 (57-120)||(15566446-15566509)
chr7 (72-120)||(14246554-14246602)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 19200609 - 19200418
Alignment:
Q  39 atcatcaacaacatcatacaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaatt 138  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  19200609 atcatcaacaacatcattcaacaacaatcataacatataatcatgatttcactaacaattcacaacaacaatatcatttttcatcaacttaagcaaaatt 19200510  T
Q  139 cacaaagtgttaatatcttcatacttcaacaatgaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaattcttcatct 230  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19200509 cacaaagtgttaatattttcatacttcaacaatgaaaatcaaacatcaacaacaattttatcatcaattcaacatacccaaattcttcatct 19200418  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 21254826 - 21255005
Alignment:
Q  42 atcaacaacatcatacaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaattcac 141  Q
    |||||||||||||| |||||  ||||||| ||||||||||||||||||  || ||||||| |||||| |||||||| || |||| |||||||||| | ||    
T  21254826 atcaacaacatcattcaacac-aatcataacatataatcatgatttcatcaataattcactacaacaccatcatttctcatcaaattaagcaaaaataac 21254924  T
Q  142 aaagtgttaatatcttcatacttcaacaatgaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaatt 222  Q
    |||| ||| ||||| |||||| ||||||||||||| ||| || |||||||||| ||| |||||||| ||||||||||||||    
T  21254925 aaagggttcatatcatcatacatcaacaatgaaaaacaaccaacaacaacaagcttaacatcaatttaacatacccaaatt 21255005  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 17820903 - 17820810
Alignment:
Q  40 tcatcaacaacatcatacaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagca 133  Q
    |||||||||||| ||| |||||| ||||||| |||||| |||||||||||  ||||||| ||||||| ||||||||||||| |||| |||||||    
T  17820903 tcatcaacaacaacattcaacaacaatcataacatatattcatgatttcatcaacaattaacaacaaaaacatcatttttcatcaaattaagca 17820810  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 20114032 - 20114090
Alignment:
Q  57 caacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcat 115  Q
    |||||| | ||||| ||||||||||||||||||| ||||||   |||||||||||||||    
T  20114032 caacaacattcatatcatataatcatgatttcaccaacaatcagcaacaacaacatcat 20114090  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 23089090 - 23089037
Alignment:
Q  78 atcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaag 131  Q
    ||||||||||||| ||||||| |||||||| ||||||||| || |||| |||||    
T  23089090 atcatgatttcaccaacaattaacaacaacgacatcatttctcatcaatttaag 23089037  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 10176855 - 10176709
Alignment:
Q  72 catataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaattcacaaagtgttaatatcttcatacttcaacaat 171  Q
    ||||||| |||||||||| |||||||   ||||||||||||||||||||  ||| |||||||||| |||||||| ||| ||||   ||||||||||| ||    
T  10176855 catataaacatgatttcattaacaat---caacaacaacatcatttttcaccaaattaagcaaaactcacaaag-gttcatattagcatacttcaaccat 10176760  T
Q  172 -gaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaatt 222  Q
     ||||||| |||| |||||||||  ||| |||||| | ||||||||||||||    
T  10176759 ggaaaatc-aacaacaacaacaaacttaacatcaaattaacatacccaaatt 10176709  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 26645723 - 26645658
Alignment:
Q  66 tcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaag 131  Q
    ||||| || |||||||||||||||| ||||||  ||||||||||||||||||||| |||| |||||    
T  26645723 tcatatcacataatcatgatttcaccaacaatcaacaacaacaacatcatttttcatcaatttaag 26645658  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 36734399 - 36734470
Alignment:
Q  57 caacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaag 131  Q
    |||||| | ||||| ||||||||||||||||||| ||||||   |||||||||||||||||||| |||| |||||    
T  36734399 caacaacattcatatcatataatcatgatttcaccaacaat---caacaacaacatcatttttcatcaatttaag 36734470  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 18224170 - 18224106
Alignment:
Q  72 catataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaa 136  Q
    |||||||||||||| |||| | || |  ||||||||||||||||||||| |||| ||||||||||    
T  18224170 catataatcatgatctcaccatcattcaacaacaacaacatcatttttcatcaaattaagcaaaa 18224106  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 11093019 - 11092863
Alignment:
Q  39 atcatcaacaacatcatacaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaatt 138  Q
    ||||||| |||||| |  |||||| | ||||| ||||||||||||||||||| |||||||   |||| |||||||||||||| |||| |||||| |||      
T  11093019 atcatcatcaacataacccaacaacattcataacatataatcatgatttcaccaacaatt---aacagcaacatcatttttcatcaatttaagctaaaac 11092923  T
Q  139 cacaaagtgttaatatcttcatacttcaacaatgaaaatcaaacatcaacaacaagttta 198  Q
      ||||||  |||| ||  | ||   ||||||||||||| ||||||||||||||||||||    
T  11092922 ttcaaagttataatttcaacttataacaacaatgaaaattaaacatcaacaacaagttta 11092863  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 11923037 - 11922980
Alignment:
Q  165 caacaatgaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaatt 222  Q
    ||||||||||||| || |||||||||||||||||| |  ||||  |||||||||||||    
T  11923037 caacaatgaaaattaagcatcaacaacaagtttataacaaatttcacatacccaaatt 11922980  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 15566509 - 15566446
Alignment:
Q  57 caacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttc 120  Q
    |||||| | ||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  15566509 caacaacattcatatcatataatcatgatttcaccaacaatcaacaacaacaacatcatttttc 15566446  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 14246602 - 14246554
Alignment:
Q  72 catataatcatgatttcactaacaattcacaacaacaacatcatttttc 120  Q
    ||||||||||||| ||||| ||||||  |||||||||||||||||||||    
T  14246602 catataatcatgaattcaccaacaatcaacaacaacaacatcatttttc 14246554  T

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