View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0329_low_29 (Length: 264)
Name: NF0329_low_29
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0329_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 44850159 - 44849981
Alignment:
| Q |
45 |
acatcatcatgattatcatatctagtggaatgaatgcacaccttgggaatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatc |
144 |
Q |
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| T |
44850159 |
acatcatcatgattatcatatctagtggaatgaatgcacaccttgggtatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatc |
44850060 |
T |
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| Q |
145 |
tgaaggaagtccttcattcttcaccttgctaacattctctccaatcctcacagtcacaaccgttttctcaaccattttc |
223 |
Q |
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| T |
44850059 |
tgaaggaagtccttcattcttcaccttgctaacattctctccaatcctcacagtcacaaccgttttctcaaccattttc |
44849981 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 10923887 - 10923935
Alignment:
| Q |
84 |
accttgggaatggagagcctttgattggtttttgtccatatttcctcca |
132 |
Q |
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||||||| |||| || ||||||||||||||||| |||||||||||||| |
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| T |
10923887 |
accttggatatggtgaccctttgattggtttttgaccatatttcctcca |
10923935 |
T |
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