View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0329_low_35 (Length: 249)

Name: NF0329_low_35
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0329_low_35
NF0329_low_35
[»] chr1 (6 HSPs)
chr1 (1-166)||(11871336-11871506)
chr1 (14-124)||(18628988-18629098)
chr1 (72-111)||(26762241-26762280)
chr1 (74-136)||(16219100-16219162)
chr1 (54-136)||(18650452-18650534)
chr1 (74-135)||(19757735-19757796)
[»] chr8 (3 HSPs)
chr8 (82-136)||(41566168-41566222)
chr8 (72-136)||(1029745-1029808)
chr8 (60-136)||(10659204-10659280)
[»] chr4 (3 HSPs)
chr4 (74-124)||(1745414-1745464)
chr4 (59-102)||(25100320-25100363)
chr4 (65-102)||(53813977-53814014)
[»] chr2 (2 HSPs)
chr2 (56-136)||(39228859-39228939)
chr2 (81-130)||(35114590-35114639)
[»] chr6 (2 HSPs)
chr6 (81-136)||(29032684-29032739)
chr6 (82-136)||(3008850-3008904)
[»] chr3 (1 HSPs)
chr3 (60-105)||(51663994-51664039)
[»] chr7 (1 HSPs)
chr7 (74-102)||(11203359-11203387)


Alignment Details
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 11871336 - 11871506
Alignment:
Q  1 ccgtgcattggttttttacggtgcttcagttacgtaaacatgaaagggtctgatacaaaaacctgaaagaatctggttcgtttaacccaaaagggtctgg 100  Q
    |||||| ||||||||||||| || ||||||     |||| |||||||||||| |||||||||| ||||||||||| |||||||||||| |||||||||||    
T  11871336 ccgtgcgttggttttttacgatggttcagt-----aaacctgaaagggtctgttacaaaaacccgaaagaatctgattcgtttaacccgaaagggtctgg 11871430  T
Q  101 ttactagcgtactagactcatcccatgatctga----------gttgttttctcgaaagagcttttattcttgatg 166  Q
    ||||  |||||||  |||||| |||||||||||          |||||||||||||||||||||||||||||||||    
T  11871431 ttacgggcgtactgaactcataccatgatctgagttcttacgcgttgttttctcgaaagagcttttattcttgatg 11871506  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 18629098 - 18628988
Alignment:
Q  14 ttttacggtgcttcagttacgtaaacatgaaagggtctgatacaaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtact 113  Q
    |||| ||||| ||| |||||||||||  ||||||||||| |||||||||   |||   |||||||||||||||   ||||||||||||||||  |||| |    
T  18629098 ttttgcggtggttcggttacgtaaacccgaaagggtctgttacaaaaactcaaaatggtctggttcgtttaacttgaaagggtctggttactgacgtatt 18628999  T
Q  114 agactcatccc 124  Q
     ||||||||||    
T  18628998 ggactcatccc 18628988  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 26762241 - 26762280
Alignment:
Q  72 tctggttcgtttaacccaaaagggtctggttactagcgta 111  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  26762241 tctggttcgtttaacccgaaagggtctggttactaacgta 26762280  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 16219100 - 16219162
Alignment:
Q  74 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    ||||||| ||||||||||||||||||  || || |||| |||||||||||  |||||||||||    
T  16219100 tggttcgattaacccaaaagggtctgactagtaacgtattagactcatcctttgatctgagtt 16219162  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 18650534 - 18650452
Alignment:
Q  54 tacaaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    |||||||||| |||||  | |||||||||||||||  |||||| ||||||||  |||| | |||||||||| |||||| ||||    
T  18650534 tacaaaaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagtt 18650452  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 19757735 - 19757796
Alignment:
Q  74 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagt 135  Q
    ||||| ||||||||| ||||||||| ||| ||| |||| | ||||||||||| |||||||||    
T  19757735 tggtttgtttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 19757796  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 41566168 - 41566222
Alignment:
Q  82 ttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  41566168 ttaacccataagggtctggttactaacgtattagactcatcccacgatctgagtt 41566222  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 1029808 - 1029745
Alignment:
Q  72 tctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    ||||||||  ||||||| |||||||||| |||||| |||| | ||||||||||| ||||||||||    
T  1029808 tctggttctattaacccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagtt 1029745  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 10659280 - 10659204
Alignment:
Q  60 aacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    |||| ||||| |||||||||||||||||  |||| |||||||| ||  |||| | ||||||||||  ||||||||||    
T  10659280 aacccgaaaggatctggttcgtttaacctgaaagagtctggttgctgacgtattggactcatccctcgatctgagtt 10659204  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 1745414 - 1745464
Alignment:
Q  74 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatccc 124  Q
    ||||||||||||||| ||||||||||||||||| |||| | ||||||||||    
T  1745414 tggttcgtttaacccgaaagggtctggttactaacgtattggactcatccc 1745464  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 25100320 - 25100363
Alignment:
Q  59 aaacctgaaagaatctggttcgtttaacccaaaagggtctggtt 102  Q
    ||||| |||||  |||||||||||||||||||||||||||||||    
T  25100320 aaacccgaaagggtctggttcgtttaacccaaaagggtctggtt 25100363  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 53814014 - 53813977
Alignment:
Q  65 gaaagaatctggttcgtttaacccaaaagggtctggtt 102  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  53814014 gaaagagtctggttcgtttaacccgaaagggtctggtt 53813977  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 39228859 - 39228939
Alignment:
Q  56 caaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    ||||||||||||||  | ||||||  ||||||| ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  39228859 caaaaacctgaaaggctatggttctgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagtt 39228939  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 35114639 - 35114590
Alignment:
Q  81 tttaacccaaaagggtctggttactagcgtactagactcatcccatgatc 130  Q
    ||||||||||||||||||||||| |  |||| |||||||||||| |||||    
T  35114639 tttaacccaaaagggtctggttattgacgtattagactcatcccttgatc 35114590  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 29032684 - 29032739
Alignment:
Q  81 tttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    |||||||||||| ||||||||||||| |||| | ||||||||||  ||||||||||    
T  29032684 tttaacccaaaatggtctggttactaacgtattggactcatccctcgatctgagtt 29032739  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 3008904 - 3008850
Alignment:
Q  82 ttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 136  Q
    ||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||    
T  3008904 ttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagtt 3008850  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 51664039 - 51663994
Alignment:
Q  60 aacctgaaagaatctggttcgtttaacccaaaagggtctggttact 105  Q
    |||| |||||| ||||||||| ||||||| ||||||||||||||||    
T  51664039 aacccgaaagagtctggttcgattaacccgaaagggtctggttact 51663994  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 11203387 - 11203359
Alignment:
Q  74 tggttcgtttaacccaaaagggtctggtt 102  Q
    |||||||||||||||||||||||||||||    
T  11203387 tggttcgtttaacccaaaagggtctggtt 11203359  T

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