View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0329_low_40 (Length: 214)

Name: NF0329_low_40
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0329_low_40
NF0329_low_40
[»] chr5 (1 HSPs)
chr5 (24-121)||(42010321-42010418)
[»] chr3 (1 HSPs)
chr3 (24-121)||(1245659-1245756)
[»] chr4 (5 HSPs)
chr4 (126-214)||(3762512-3762600)
chr4 (132-214)||(3745722-3745804)
chr4 (132-214)||(3776599-3776681)
chr4 (132-214)||(3780912-3780994)
chr4 (132-214)||(3751539-3751621)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  42010418 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct 42010321  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  1245756 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct 1245659  T

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Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 3762512 - 3762600
Alignment:
Q  126 cactgtcaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtcatagtacttccattatactttcct 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttcct 3762600  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 3745722 - 3745804
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtcatagtacttccattatactttcct 214  Q
    ||||||||| |||||| |||||||||||||||||||| | ||| |||||||||||||| |||||||| |||||||||||||||    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttcct 3745804  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 3776599 - 3776681
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtcatagtacttccattatactttcct 214  Q
    |||||||||||||||| ||||||||||||||| ||||  ||||||||||||||||||| || ||||| |||||||||||||||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttcct 3776681  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 3780912 - 3780994
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtcatagtacttccattatactttcct 214  Q
    ||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||| | |||||| |||||||||||||||    
T  3780912 caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttcct 3780994  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 3751539 - 3751621
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtcatagtacttccattatactttcct 214  Q
    |||||| || ||||||||| ||| ||||||||| | | | |||||||||||||||||| || ||||| |||||||||||||||    
T  3751539 caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttcct 3751621  T

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