View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0329_low_5 (Length: 418)

Name: NF0329_low_5
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0329_low_5
NF0329_low_5
[»] chr2 (13 HSPs)
chr2 (29-406)||(11103956-11104333)
chr2 (59-269)||(11095634-11095844)
chr2 (64-263)||(11145245-11145444)
chr2 (98-263)||(11149179-11149344)
chr2 (98-268)||(11136941-11137111)
chr2 (65-263)||(11110094-11110292)
chr2 (61-187)||(11171246-11171372)
chr2 (65-263)||(11155562-11155760)
chr2 (65-262)||(11118099-11118296)
chr2 (150-261)||(11191956-11192067)
chr2 (64-130)||(11177309-11177375)
chr2 (98-180)||(10794028-10794110)
chr2 (160-256)||(11200121-11200217)
[»] chr4 (1 HSPs)
chr4 (288-325)||(51906708-51906745)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 29 - 406
Target Start/End: Complemental strand, 11104333 - 11103956
Alignment:
Q  29 actagtgaccatataaagtttatgaaattaaaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttagga 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104333 actagtgaccatataaagtttatgaaattaaaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttagga 11104234  T
Q  129 cattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcag 228  Q
    |||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104233 cattcttcttcaactgctgtcttgattttattcacaacatccaaacgctttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcag 11104134  T
Q  229 tgttgttcaacaaaactgatccatcacagccctgtcacaaaaaagacttttcatttactttattttagggttaaatatgattttgttccttacatttcta 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104133 tgttgttcaacaaaactgatccatcacagccctgtcacaaaaaagacttttcatttactttattttagggttaaatatgattttgttccttacatttcta 11104034  T
Q  329 gtatattttgattttaatccgtgatagttttttatttaaattcagtctttacgaatattataattgttcttagagtct 406  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11104033 gtatatttttattttaatacgtgatagttttttatttaaatttagtctttacgaatattataattgttcttagagtct 11103956  T

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Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 59 - 269
Target Start/End: Complemental strand, 11095844 - 11095634
Alignment:
Q  59 aaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttga 158  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||   |||||||| | |||||||||||||||||||||     
T  11095844 aaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaacagtggctggacattcattttcaactgctgtcttgatttgg 11095745  T
Q  159 ttcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagc 258  Q
    || |||||||||||||| |||||||||||| ||||||||| ||||||||| ||||| || || |||| |||||||||||||||||||||||||||||| |    
T  11095744 tttacaacatccaaaccccttaatgagtttatgtttggaagtgcatcttgctcacttactatggtattagtgttgttcaacaaaactgatccatcacaac 11095645  T
Q  259 cctgtcacaaa 269  Q
    |||||||||||    
T  11095644 cctgtcacaaa 11095634  T

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Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 64 - 263
Target Start/End: Complemental strand, 11145444 - 11145245
Alignment:
Q  64 ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcac 163  Q
    |||||||  |||| |||| |||||| |||| || ||||||||||||||||||||| |||||||| ||  | | ||| |||||||| ||||||||||||||    
T  11145444 ataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcac 11145345  T
Q  164 aacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt 263  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||| ||||||    
T  11145344 aacatccaaacctctcaatgagtttctgtttggaaaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgt 11145245  T

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Target: chr2; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 11149344 - 11149179
Alignment:
Q  98 aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga 197  Q
    |||||||||||| |||||||| |||||||||||  | | ||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  11149344 aagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctcttaatgagtttctgtttgga 11149245  T
Q  198 aatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt 263  Q
    || |||||||||||||||||||  |||||||| |||||||  ||||||||| ||||||| ||||||    
T  11149244 aaagcatcttgttcactcacaacggtatcagttttgttcagtaaaactgatgcatcacaaccctgt 11149179  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 11137111 - 11136941
Alignment:
Q  98 aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga 197  Q
    ||||||||||||||||||||| |||||||||||  | | ||| |||||||| |||||||||||||||||||||||||||| ||  |||||  | |||||     
T  11137111 aagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagttgatatttggg 11137012  T
Q  198 aatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgtcacaa 268  Q
    || || ||||||||||||||||| |||||||| |||||||| ||||||||| ||||||| |||||| ||||    
T  11137011 aaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaaccctgttacaa 11136941  T

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Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 263
Target Start/End: Complemental strand, 11110292 - 11110094
Alignment:
Q  65 taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca 164  Q
    |||||||| |||||||| | |||  ||||  |||||||||||||||||||||||  | ||||| ||  ||| ||| |||   |||||||||||||| | |    
T  11110292 taccagaacagaagatattccagacgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgata 11110193  T
Q  165 acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt 263  Q
    |||||||| |||||||| |||||  | |||||||| |||||||||||||||||||| ||  | ||||| ||||||||||||||| ||||||| ||||||    
T  11110192 acatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgt 11110094  T

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Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 11171372 - 11171246
Alignment:
Q  61 aacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgatt 160  Q
    |||||||||||| ||| || | |||||| |||| || |||||||||||||||||||||||||||||||||  | | ||| |||||||| |||||||||||    
T  11171372 aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgatt 11171273  T
Q  161 cacaacatccaaacctcttaatgagtt 187  Q
    ||||||||| |||||||||| ||||||    
T  11171272 cacaacatctaaacctcttattgagtt 11171246  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 263
Target Start/End: Complemental strand, 11155760 - 11155562
Alignment:
Q  65 taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca 164  Q
    |||||||| ||| ||| ||| ||| |||| || ||||||||||||||||||||| |||||||||||  |   ||| |  || || ||||| ||||| |||    
T  11155760 taccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttaca 11155661  T
Q  165 acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt 263  Q
    ||||||||||||||||| |||||  | |||||||| || | |||||| || || || ||| |||| |||||||||||||| ||  ||||||| ||||||    
T  11155660 acatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgt 11155562  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 262
Target Start/End: Complemental strand, 11118296 - 11118099
Alignment:
Q  65 taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca 164  Q
    ||||||||  ||||||||| |||||||||  || ||||||||||||||||||||  | ||||||||  ||| ||| ||  | || || || ||||| | |    
T  11118296 taccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaactttattaggacaaactttttccacctcagttttaatctgattgata 11118197  T
Q  165 acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg 262  Q
    |||||||| | |||||| |||||| | ||||||   ||||||||||||||| |||| |||  ||| || ||||||||||||||| ||||||| |||||    
T  11118196 acatccaatcttcttaaggagtttatatttggaccagcatcttgttcactcgcaatagtagaagttttattcaacaaaactgatgcatcacaaccctg 11118099  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 11191956 - 11192067
Alignment:
Q  150 ttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatc 249  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||||| || ||  |||| |||||||| || ||||||| ||  |||||||| | ||||     
T  11191956 ttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgatg 11192055  T
Q  250 catcacagccct 261  Q
    ||||||| ||||    
T  11192056 catcacaaccct 11192067  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 11177375 - 11177309
Alignment:
Q  64 ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca 130  Q
    ||||||||  |||||||| |||||| | ||  | |||||||||||||||||||||||||||||||||    
T  11177375 ataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggaca 11177309  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 10794028 - 10794110
Alignment:
Q  98 aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctctta 180  Q
    ||||||||||||||||||||| || ||||| ||  ||| ||| ||  ||||||||||  |||||||||| | |||||||||||    
T  10794028 aagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctctta 10794110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 11200217 - 11200121
Alignment:
Q  160 tcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcaca 256  Q
    |||||||||||||||||||||  |||||  | |||||||| || | |||||| || || |||||  | |||||||||| |||||| ||| |||||||    
T  11200217 tcacaacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcaca 11200121  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 51906745 - 51906708
Alignment:
Q  288 ttattttagggttaaatatgattttgttccttacattt 325  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  51906745 ttattttagggttaaatatgattttggtccctacattt 51906708  T

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