View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0329_low_6 (Length: 342)
Name: NF0329_low_6
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0329_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 313
Target Start/End: Original strand, 20223521 - 20223810
Alignment:
| Q |
24 |
agagtataggcattgctgatttgggatgttcatctggaccaaatactctatcaatcatcaaagatatctttcaaaccattcaagtaacaagtcataagat |
123 |
Q |
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| T |
20223521 |
agagtataggcattgctgatttgggatgttcatctggaccaaatactctatcaatcatcaaagatatctttcaaaccattcaagtaacaagtcataagat |
20223620 |
T |
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| Q |
124 |
catgcaccattctactgagtttagagtctattttaatgatcttccaactaatgacttcaattcaatctttaaggctttgcctgaattccaaaagttgctt |
223 |
Q |
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| T |
20223621 |
catgcaccattctactgaatttagagtctattttaatgatcttccaactaatgacttcaattctatctttaaggctttgcctgaattccaaaagttgctt |
20223720 |
T |
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| Q |
224 |
aatcaagataggaaaaatgggtttccttccatttttatgggtggttaccctggttcattttatggaagacttttccctaatagttacttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20223721 |
aatcaagataggaaaaatgggtttccttccatttttatgggtggttaccctggttcattttatggaagacttttccctaatagttacttg |
20223810 |
T |
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