View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0331-INSERTION-1 (Length: 747)
Name: NF0331-INSERTION-1
Description: NF0331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0331-INSERTION-1 |
 | |
|
| [»] scaffold0070 (6 HSPs) |
| | |
|
| [»] scaffold0955 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 25383970 - 25384452
Alignment:
| Q |
8 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggtaannnnnn |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25383970 |
ttttggaagtacaatgaatgttttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgagattgctccatcaacaggtaattgttt |
25384069 |
T |
|
| Q |
108 |
nnnatcatattaatgttatttgattaactattggaaatttaagatttttaaaatgtttgtataaacagaacagaagctgaacttgttgacgaaattgcga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25384070 |
tttatcatattaatgttatttgattaactattggaaatttaagatttttaaaatgtttgtataaacagaacagaagctgaacttgttgaggaaattgcga |
25384169 |
T |
|
| Q |
208 |
tggatgtgctgcaaaagctgcaacatgtttatgttcgtgatctggatcaccaaattactaaattagtgcaacttgcacaacttcagctacaatactataa |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25384170 |
tggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcaccaaattactaaattagtgcaacttgcacaacttcagctacaatactataa |
25384269 |
T |
|
| Q |
308 |
aagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtctgcatgcttcgtttgact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25384270 |
aagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtccgcatgcttcgtttgact |
25384369 |
T |
|
| Q |
408 |
tgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataaatgtgcttcttcttttac |
490 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25384370 |
catgagatgctttcatatatgaaagattcagaagcttatgaaaaactattttaggtgcattataaatgtgcttcttcttttac |
25384452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 163 - 489
Target Start/End: Original strand, 25692474 - 25692800
Alignment:
| Q |
163 |
tttgtataaacagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgcaacatgtttatgttcgtgatctggatcaccaaat |
262 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || | | |||||||||| |||| ||||||| ||||| |
|
|
| T |
25692474 |
tttgtacaaacagaacagaagctgaacttgttgaggaaattgcaatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatcaaat |
25692573 |
T |
|
| Q |
263 |
tactaaattagtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcata |
362 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25692574 |
tactaaactagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaaataagtcatgaggcaacggttcaatgcata |
25692673 |
T |
|
| Q |
363 |
actgaacttaagatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttagg |
462 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
25692674 |
actgaacttaagatgaagagaagcatccgcatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactattttagt |
25692773 |
T |
|
| Q |
463 |
tgcattataaatgtgcttcttctttta |
489 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
25692774 |
tgcattatagatgtgcttcttctttta |
25692800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 539 - 747
Target Start/End: Original strand, 25384518 - 25384726
Alignment:
| Q |
539 |
tttaatcagcacaaagtttagtgcatgtagttggtgcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaagattctaagatagc |
638 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25384518 |
tttaatcagcacaaagtttagcgcatgtagttggagcacaatgtgtgtaactgtgattttagtgaactcaaggatatcaaaataaagattcttagatagc |
25384617 |
T |
|
| Q |
639 |
attaaacaacaagtaaactcttcaatttctcttgaggcatactatacgtttgtctgttgctacaaaacagagttaagaactcatgcattgatcgtgcaac |
738 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25384618 |
attaaacaacaagtaaactcttcaatttttcttgaggcatactatacgtttgtctgttgctacaaaacagagttaataactcatgcattgatcgtgcaac |
25384717 |
T |
|
| Q |
739 |
agagtccca |
747 |
Q |
| |
|
||||||||| |
|
|
| T |
25384718 |
agagtccca |
25384726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 303 - 490
Target Start/End: Original strand, 25798562 - 25798749
Alignment:
| Q |
303 |
tataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtctgcatgcttcgtt |
402 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
25798562 |
tataagagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaatgcataaaagaacttaagatgaagagaagcatccgcatgcttcgtt |
25798661 |
T |
|
| Q |
403 |
tgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataaatgtgcttcttcttttac |
490 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
25798662 |
tgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattataaatgtggttcttcttttac |
25798749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 297 - 490
Target Start/End: Original strand, 25488163 - 25488360
Alignment:
| Q |
297 |
caatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtc----tgc |
392 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
25488163 |
caatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcatcgcataacagaacttaagatgaagagaagcgtccgcatgc |
25488262 |
T |
|
| Q |
393 |
atgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataaatgtgcttcttcttttac |
490 |
Q |
| |
|
|||||||||||||| |||| || |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
25488263 |
atgcttcgtttgacacgtgaaatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattataaatgtggttcttcttttac |
25488360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 25692294 - 25692446
Alignment:
| Q |
8 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggtaannnnnn |
107 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25692294 |
ttttgaaagtacaatgaatattgtgcaaaaatggagggatgctttgggagaagaagccaaccattcagggtgggattgctccatcaacaggtaatttttt |
25692393 |
T |
|
| Q |
108 |
nnnatcatattaatgttatttgattaactattggaaatttaagatttttaaaa |
160 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
25692394 |
tttatcatattaaaattatttgattagctattagaaaaataagatttttaaaa |
25692446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 25602698 - 25602836
Alignment:
| Q |
311 |
catagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcg-------tctgcatgcttcgttt |
403 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
25602698 |
catagatacttatgaaaataaagtttgtcatgaggcaacggttgaacgcataacagaacttaagatgaagagaagtgtctgcaatctgcatgcttcgttt |
25602797 |
T |
|
| Q |
404 |
gacttgtgagatactttcatacatgaaagattcagaagc |
442 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
25602798 |
gacacgtgagatgctttcatacatgaaagattcagaagc |
25602836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 25645844 - 25645937
Alignment:
| Q |
8 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggtaa |
101 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25645844 |
ttttgcaagtacaatgaatattgtgcaaaaatggaggtatgctttgggagaacctgccaaccattctgggtgggattgctcaatcaacaggtaa |
25645937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 25388627 - 25388697
Alignment:
| Q |
8 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggt |
78 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25388627 |
ttttggaagtacaatgaatattgtgcaaaaatggagggatgctttgggagaagcagccaaccattttgggt |
25388697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 647 - 714
Target Start/End: Original strand, 25692823 - 25692890
Alignment:
| Q |
647 |
acaagtaaactcttcaatttctcttgaggcatactatacgtttgtctgttgctacaaaacagagttaa |
714 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25692823 |
acaagtaaactcttaaatttttgttgaggcatactatacgtttgtctgttgctacaaaacagagttaa |
25692890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 25602609 - 25602695
Alignment:
| Q |
187 |
aacttgttgacgaaattgcgatggatgtgctgcaaaagctgcaacatgtttatgttcgtgatctggatcaccaaattactaaattag |
273 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| || | | | |||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
25602609 |
aacttgttgaggaaattgcaatggatgtgctgcaaaatttgaatcgtctttatgttggtgacttggatcaacaaattactaaattag |
25602695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 25389404 - 25389453
Alignment:
| Q |
111 |
atcatattaatgttatttgattaactattggaaatttaagatttttaaaa |
160 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
25389404 |
atcatattaatgttatttgatttactattagaaaaataagatttttaaaa |
25389453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 627
Target Start/End: Original strand, 25488446 - 25488499
Alignment:
| Q |
574 |
gcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaagat |
627 |
Q |
| |
|
||||||||||| | ||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
25488446 |
gcacaatgtgtctgactgtgagtttagtaaactcgaggatatcaaaataaagat |
25488499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 160 - 490
Target Start/End: Complemental strand, 19452 - 19122
Alignment:
| Q |
160 |
atgtttgtataaacagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgcaacatgtttatgttcgtgatctggatcacca |
259 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || | | |||||||||| |||| ||||||| || |
|
|
| T |
19452 |
atgtttgtacaaacagaacataagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatca |
19353 |
T |
|
| Q |
260 |
aattactaaattagtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgc |
359 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||| ||||||||| |||| |
|
|
| T |
19352 |
aattactatactagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaattaagtaagtcatgagtcaacggttccacgc |
19253 |
T |
|
| Q |
360 |
ataactgaacttaagatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactatttt |
459 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
19252 |
ataactgaacttaagatgaagagaagcatccgcatgcttcgtttgacacgtgagatgttttcatacatggaagattcagaagcttataaaaaactatttt |
19153 |
T |
|
| Q |
460 |
aggtgcattataaatgtgcttcttcttttac |
490 |
Q |
| |
|
|| || |||||||| |||||||| |||||| |
|
|
| T |
19152 |
agttgtgttataaatttgcttctttttttac |
19122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 160 - 490
Target Start/End: Complemental strand, 38838 - 38519
Alignment:
| Q |
160 |
atgtttgtataaacagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgcaacatgtttatgttcgtgatctggatcacca |
259 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || || ||| || | | || |
|
|
| T |
38838 |
atgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatgggtgtgctgcaaaagttgattcaatattaaattagag-----------ca |
38750 |
T |
|
| Q |
260 |
aattactaaattagtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgc |
359 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38749 |
aattattaaattagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaacgc |
38650 |
T |
|
| Q |
360 |
ataactgaacttaagatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactatttt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
38649 |
ataactgaacttaagatgaagagaagcgtccgcatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactatttt |
38550 |
T |
|
| Q |
460 |
aggtgcattataaatgtgcttcttcttttac |
490 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |
|
|
| T |
38549 |
agttgcattataaatgtggttcttcttttac |
38519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 39140 - 39008
Alignment:
| Q |
8 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggtaa-nnnnn |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39140 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtggcattgctccatcaacaggtaacttttc |
39041 |
T |
|
| Q |
107 |
nnnnatcatattaatgttatttgattaactatt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39040 |
tattatcatattaatgttatttgattaactatt |
39008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 19626 - 19535
Alignment:
| Q |
8 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggt |
99 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19626 |
ttttgcaagtacaatgaatattgtgcaaaaatggagggatgctttgggaaaagcagccaaccattctgggtgggattgctccatcaacaggt |
19535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 574 - 714
Target Start/End: Complemental strand, 19008 - 18863
Alignment:
| Q |
574 |
gcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaagattctaagatagcattaaacaacaagtaaactctt-caatttctcttg |
672 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
19008 |
gcacaatgtgtgtaactgag--tttagtgaactcaaggatatcaaaataaagattcttaaatagcattaaaccacaagtaaactcttaaaatttttcttg |
18911 |
T |
|
| Q |
673 |
aggcatactatac------gtttgtctgttgctacaaaacagagttaa |
714 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18910 |
aggcatactatacatgggtatttgtctgttgctacaaaacagagttaa |
18863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 490
Target Start/End: Complemental strand, 19098 - 19057
Alignment:
| Q |
449 |
aaaactattttaggtgcattataaatgtgcttcttcttttac |
490 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
19098 |
aaaactattttagttgcattatagatgtgcttcttcttttac |
19057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 160 - 487
Target Start/End: Original strand, 3602 - 3918
Alignment:
| Q |
160 |
atgtttgtataaacagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgcaacatgtttatgttcgtgatctggatcacca |
259 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || ||| || | | || |
|
|
| T |
3602 |
atgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgattcaatattaaattagag-----------ca |
3690 |
T |
|
| Q |
260 |
aattactaaattagtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgc |
359 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3691 |
aattattaaattagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaacgc |
3790 |
T |
|
| Q |
360 |
ataactgaacttaagatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactatttt |
459 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3791 |
ataactgaacttaagatgaagagaagcatccacatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactatttt |
3890 |
T |
|
| Q |
460 |
aggtgcattataaatgtgcttcttcttt |
487 |
Q |
| |
|
|| ||||||||||||||| ||||||||| |
|
|
| T |
3891 |
agttgcattataaatgtggttcttcttt |
3918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 3305 - 3458
Alignment:
| Q |
8 |
ttttggaagtacaatgaatattttgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggtaa-nnnnn |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3305 |
ttttggaagtacaatgaatattttgcaaaaatagagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggtaacttttt |
3404 |
T |
|
| Q |
107 |
nnnnatcatattaatgttatttgattaactattggaaatttaagatttttaaaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
3405 |
tattatcatattaatgttatttgattaactattagaaaaataagatttttaaaa |
3458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 304 - 490
Target Start/End: Original strand, 20591918 - 20592103
Alignment:
| Q |
304 |
ataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtctgcatgcttcgttt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
20591918 |
ataaaagcatagatacttatgaaaatcaagtaagtcatgacgcaacggttgaacgtataatagaacttaagatgaagagaagcatccgcatgcttcgttt |
20592017 |
T |
|
| Q |
404 |
gacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataaatgtgcttcttcttttac |
490 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
20592018 |
gacacgtgagatgctttcatacatggaagattcagaagcttat-gaaaactattttagttgcattatagatgtgcttcttcttttac |
20592103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 624
Target Start/End: Original strand, 20592190 - 20592238
Alignment:
| Q |
574 |
gcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaa |
624 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||||||| |
|
|
| T |
20592190 |
gcacaatgtgtgtaactgag--tttagtgaactcaaggatatcaaaataaa |
20592238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 679
Target Start/End: Complemental strand, 30163150 - 30163105
Alignment:
| Q |
634 |
atagcattaaacaacaagtaaactcttcaatttctcttgaggcata |
679 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
30163150 |
atagcattaaaccacaagtaaactctccaatttttcttgaggcata |
30163105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 16499549 - 16499479
Alignment:
| Q |
31 |
tgcaaaaatggagggatgctttgggagaagcagccaaccattctgggtgggattgctccatcaacaggtaa |
101 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||| | ||||| ||||||||||| | ||| |||||| |
|
|
| T |
16499549 |
tgcaaaagtggagggaggctttgagagaagcagccaatctctctggctgggattgctctaccaataggtaa |
16499479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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