View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0331-INSERTION-3 (Length: 720)
Name: NF0331-INSERTION-3
Description: NF0331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0331-INSERTION-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 430 - 720
Target Start/End: Original strand, 2683902 - 2684187
Alignment:
| Q |
430 |
catcacaccccaaaccccaccaccaaatcaatcccaaaa-ctactctatgcaacnnnnnnnnnnnnnnnncgcagcaaagtattggttccgtcggtgttg |
528 |
Q |
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| T |
2683902 |
catcacaccccaaaccccaccaccaaatcaatcccaaaaactactctatgcaacaaaaaaaaaa------cgcagcaaagtattcgttcagtcggtgttg |
2683995 |
T |
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| Q |
529 |
ctgctggtgcaattctccactctacatttatccacaaaaattaaatgnnnnnnnntcaggtttcaccattgttgaacggtttaccttccttgttattttt |
628 |
Q |
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| T |
2683996 |
ctgctggtgcacttctccactctacatttatccacaaaaattaaatgaaaaaaaatcaggtttcaccattgttgaacggtttagcttccttgttattttt |
2684095 |
T |
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| Q |
629 |
ataaaatgtttcaccgtattttataaaaatactttgcacctttgagatggcacaaatgagatttgagatggcatagaaacaaggataatata |
720 |
Q |
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| T |
2684096 |
ataaaatgttgcaccgtattttataagaatactttgcacctttgagatggcacaaatgagatttgagatggcatagaaacaaggataatata |
2684187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 2683484 - 2683701
Alignment:
| Q |
8 |
agtttgattatatcgtaagaaacatgtttaaataatttgagttttcctttattatgaaaaataaaattgattggtgggataagaaataatttgatacata |
107 |
Q |
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| T |
2683484 |
agtttgattatatcgtaagtaacatgtttaaataatttgagttttcctttattatgaaaaataaaattgattggtgggataagaaataatttgatacata |
2683583 |
T |
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| Q |
108 |
gggtctaccatattactatatgacatagattcatctctggttaaaactacttatccatcgtgaaccatatataacacttgttcaccgaagaactcgtcat |
207 |
Q |
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| T |
2683584 |
gggtctaccatattactatatgacatagatccatctttgtttaaaattacttatccatcgtgaaccatatataacacttgttcaccgaagaactcttcat |
2683683 |
T |
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| Q |
208 |
attgagtttgtttggttt |
225 |
Q |
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| T |
2683684 |
atagggtgtgtttggttt |
2683701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 29522224 - 29522313
Alignment:
| Q |
16 |
tatatcgtaagaaacatgtttaaataatttgagttttcctttattatgaaaaataaaattgattggtgggataagaaataatttgatacatag |
108 |
Q |
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| T |
29522224 |
tatattgtaaaaaacatgtttaaataatttgagttttactttattgtaaaaaatacgatgga---gtgggacgagaaataatttgatacatag |
29522313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 29522392 - 29522447
Alignment:
| Q |
148 |
ttaaaactacttatccatcgtgaaccatatataacacttgttcaccgaagaactcg |
203 |
Q |
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| T |
29522392 |
ttaaaagtacttatccatcgtggaccatatgtagcacttgtccaccgaagaactcg |
29522447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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