View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0331-INSERTION-4 (Length: 747)
Name: NF0331-INSERTION-4
Description: NF0331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0331-INSERTION-4 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 382 - 716
Target Start/End: Original strand, 1768192 - 1768526
Alignment:
| Q |
382 |
tcatctcaaactatggactaatggtgcttactgcctagtagatacataccacaatattannnnnnngttaatacacctcaatcattcttatttttcaatt |
481 |
Q |
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| T |
1768192 |
tcatctcaaactatggactaatggtgcttactgcctagtagatacataccacaatattatttttttgttaatacacctcaatcattcttatttttcaatt |
1768291 |
T |
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| Q |
482 |
ttatgataacatattcttattttacaatatgaatttaacactgttttctagtatggttgacttcccattttaaaatcttaaatatcataattttagaagg |
581 |
Q |
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| T |
1768292 |
ttatgataacatattcttattttacaatatgaatttaacactgttttctagtatgtttgacttcccattttaaaatcttaaatatcataattttagaagg |
1768391 |
T |
|
| Q |
582 |
aaattttttaaattagattatcgacattcatataatcacacaatcgataatttgaactgtcatgttaagattagacggtttatattctaactttgtattt |
681 |
Q |
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| T |
1768392 |
aaaatttttagattagattatcgacattcatacaatcacacaatcgatgattcgaactgtcatgttaagattagatgatttatattctaactttgtattt |
1768491 |
T |
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| Q |
682 |
tggactcaatttataaaagttgactcatagatggt |
716 |
Q |
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| T |
1768492 |
tggactcgatttacaaaagttgactcatagatggt |
1768526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 1767822 - 1768118
Alignment:
| Q |
8 |
aaattttgtttgtccaaaattgagcccactcttctcctacgctacatgatccgcacaccaaaaatattcatcaaatagcaggttaaattcacaagagtga |
107 |
Q |
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| T |
1767822 |
aaattttgtttgtccaaaattgagcccactcttctcctacgctacatgatccgcacaccaaaaaaattcatcaaatcgcgggttaaattcacaagagtaa |
1767921 |
T |
|
| Q |
108 |
ttgttttttcattgacgaagtgataaacacaccaccctaaattcacacatacaattattagatagtagatttgaacctaaataaaagtgttaatttagtc |
207 |
Q |
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| T |
1767922 |
ttgttttttcattgacgaagtgataaacacaccaccctaaattcacacatacaattattagatagtggatttgaaccaaaataaaagtg----tttagtc |
1768017 |
T |
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| Q |
208 |
taacaaattcgacattactcattgaactagatctaagctactaatgatgcattttatattaagtttgtaccgttaaacaaacacctcgtagtgaagtact |
307 |
Q |
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| T |
1768018 |
taacaaattcgacattactcatggaactagatctaagctactaatgatgcattttatattaagtttgtaccgttaaataaacacctcgtagtgaagcact |
1768117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 702
Target Start/End: Complemental strand, 7867989 - 7867950
Alignment:
| Q |
663 |
atattctaactttgtattttggactcaatttataaaagtt |
702 |
Q |
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| T |
7867989 |
atattctaactttgtatttttgtctcaatttataaaagtt |
7867950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 647 - 703
Target Start/End: Complemental strand, 54952397 - 54952341
Alignment:
| Q |
647 |
taagattagacggtttatattctaactttgtattttggactcaatttataaaagttg |
703 |
Q |
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|||||| |||||||| |||||| |||||| |||||||||||||||||| ||||||| |
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| T |
54952397 |
taagataagacggttcatattccaactttatattttggactcaatttagtaaagttg |
54952341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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