View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0331-INSERTION-5 (Length: 291)
Name: NF0331-INSERTION-5
Description: NF0331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0331-INSERTION-5 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 291
Target Start/End: Complemental strand, 1586802 - 1586518
Alignment:
| Q |
4 |
aacatgatctccttccgttgtttcttggcgaacatgatctccttccattgtttcttggcaaagatgttgattgattttctgtatttgtgctaactcttgt |
103 |
Q |
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|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1586802 |
aacatgatctccttccattgtttcttggacaacat---ctccttccattgtttcttggcaaagatgttgattgattttctgtatttgtgctaactcttgt |
1586706 |
T |
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| Q |
104 |
tcggtataaagctgaggtgaataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttccattgtttccatattttgca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1586705 |
tcggtataaagctgaggtgaataataagataacagattatgcaaagtaaagtgagggaaagggttgaatttcctttcttccattgtttccatattttgca |
1586606 |
T |
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| Q |
204 |
tcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagctttctt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1586605 |
tcaatgcattgatcttcttcctagccatagcagctttcttttccaacatggcttccatattttcattcatcttcatcatagctttctt |
1586518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 1580648 - 1580408
Alignment:
| Q |
51 |
ttgtttcttggcaaagatgttgattgattttctgtatttgtgctaactcttgttcggtataaagctgaggtgaataataagataacagattatgcaaagt |
150 |
Q |
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| T |
1580648 |
ttgtttcttggcgaagatgttgattgattttctctatttgtgctaaatctttttcggtataaagctgaggtgcataataagataacagattatgcaaagt |
1580549 |
T |
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| Q |
151 |
aaagtgagggaaagggttgaatttcctttcttccattgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580548 |
aaagtgagggaaagggttgaatttcctttcttccattgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaac |
1580449 |
T |
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| Q |
251 |
atggcttccatattttcattcatcttcatcatagctttctt |
291 |
Q |
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| T |
1580448 |
atggcttccatattttcattcatcttcatcatagctttctt |
1580408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 51 - 291
Target Start/End: Original strand, 1604167 - 1604407
Alignment:
| Q |
51 |
ttgtttcttggcaaagatgttgattgattttctgtatttgtgctaactcttgttcggtataaagctgaggtgaataataagataacagattatgcaaagt |
150 |
Q |
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| T |
1604167 |
ttgtttcttggcgaagatgttgattgattttctctatttgtgctaaatctttttcggtataaagctgaggtgcataataagataacagattatgcaaagt |
1604266 |
T |
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| Q |
151 |
aaagtgagggaaagggttgaatttcctttcttccattgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1604267 |
aaagtgagggaaagggttgaatttcctttcttccattgtttccatattttgcatcaatgcattgatcttcttcctagccatagcagctttcttttccaac |
1604366 |
T |
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| Q |
251 |
atggcttccatattttcattcatcttcatcatagctttctt |
291 |
Q |
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| T |
1604367 |
atggcttccatattttcattcatcttcatcatagctttctt |
1604407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 1586832 - 1586775
Alignment:
| Q |
4 |
aacatgatctccttccgttgtttcttggcgaacatgatctccttccattgtttcttgg |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1586832 |
aacatgatctccttccgttgtttcttggcgaacatgatctccttccattgtttcttgg |
1586775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 1586946 - 1586889
Alignment:
| Q |
4 |
aacatgatctccttccgttgtttcttggcgaacatgatctccttccattgtttcttgg |
61 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1586946 |
aacatgatctccttccgttgtttcttggtgaacatgatctccttccattgtttcttgg |
1586889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 1591058 - 1591155
Alignment:
| Q |
4 |
aacatgatctccttccgttgtttcttggcgaacatgatctccttccattgtttcttggcaaagatgttgattgattttctgtatttgtgctaactctt |
101 |
Q |
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||||||||||| | || |||||||||||| ||||||||||| |||||||||||||||| || | |||||| || ||||| ||||| ||||||||||| |
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| T |
1591058 |
aacatgatctcgtgccattgtttcttggcaaacatgatctcgttccattgtttcttggagaacacgttgatagagtttctttatttctgctaactctt |
1591155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 1586856 - 1586804
Alignment:
| Q |
10 |
atctccttccgttgtttcttggcgaacatgatctccttccattgtttcttggc |
62 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1586856 |
atctccttccattgtttcttggcgaacatgatctccttccgttgtttcttggc |
1586804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 1586970 - 1586919
Alignment:
| Q |
10 |
atctccttccgttgtttcttggcgaacatgatctccttccattgtttcttgg |
61 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1586970 |
atctccttccattgtttcttggcgaacatgatctccttccgttgtttcttgg |
1586919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 1591034 - 1591089
Alignment:
| Q |
10 |
atctccttccgttgtttcttggcgaacatgatctccttccattgtttcttggcaaa |
65 |
Q |
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|||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
1591034 |
atctccttccattgtttcttggcgaacatgatctcgtgccattgtttcttggcaaa |
1591089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 1587081 - 1587030
Alignment:
| Q |
10 |
atctccttccgttgtttcttggcgaacatgatctccttccattgtttcttgg |
61 |
Q |
| |
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||||| |||| |||||| ||||||||||||||||||||| |||||||||||| |
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| T |
1587081 |
atctctttccattgttttttggcgaacatgatctccttctattgtttcttgg |
1587030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 1586916 - 1586862
Alignment:
| Q |
4 |
aacatgatctccttccgttgtttcttggcgaacatgatctccttccattgtttcttgg |
61 |
Q |
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|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
1586916 |
aacatgatctccttccattgtttcttggaaaacat---ctccttccattgtttcttgg |
1586862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 19270865 - 19270950
Alignment:
| Q |
16 |
ttccgttgtttcttggcgaacatgatctccttccattgtttcttggcaaagatgttgattgattttctgtatttgtgctaactctt |
101 |
Q |
| |
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|||| |||||||||||||||||||||||| |||| ||||||||||| || | |||||| || ||||| ||||||||| ||||||| |
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| T |
19270865 |
ttccattgtttcttggcgaacatgatctcgttcctttgtttcttggagaacacgttgatagagtttctttatttgtgccaactctt |
19270950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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