View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0331-INSERTION-6 (Length: 236)
Name: NF0331-INSERTION-6
Description: NF0331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0331-INSERTION-6 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold1213 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 8395536 - 8395747
Alignment:
| Q |
28 |
ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctc--gggtg |
125 |
Q |
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| T |
8395536 |
ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctcaagggtg |
8395635 |
T |
|
| Q |
126 |
atttagtatcaattatatttatccaaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaa-ttttttctttggtaactttgttg |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |||| |
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| T |
8395636 |
atttagtatcaattatatttatccaaaatcacgttttattttcttttgtaaataagtgattttcaaatatatttaatttttttctttggcgacttcgttg |
8395735 |
T |
|
| Q |
225 |
tatgtgacgtta |
236 |
Q |
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|||||||||||| |
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| T |
8395736 |
tatgtgacgtta |
8395747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 8406294 - 8406130
Alignment:
| Q |
60 |
taatttatctacttctaatttaagaatgttaa-ctctctctcagtctccactta-------cgaccctc--gggtgatttagtatcaattatatttatcc |
149 |
Q |
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| T |
8406294 |
taatttatctacttctaatttaagaatgttattctctctctcgacctccacttaagagttacgaccatcaaggttgacttagaatcaattatttttacac |
8406195 |
T |
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| Q |
150 |
aaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaattttttctttggt |
214 |
Q |
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| T |
8406194 |
aaaatcaagttttttcttctttttttcaaaagtgatttttacttatatttagttttttctttggt |
8406130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 30292864 - 30292901
Alignment:
| Q |
174 |
taaataagtgattttcatatatatttaattttttcttt |
211 |
Q |
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| T |
30292864 |
taaataagtgattttcatatttatttaattttttcttt |
30292901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 18079758 - 18079798
Alignment:
| Q |
174 |
taaataagtgattttcatatatatttaattttttctttggt |
214 |
Q |
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| T |
18079758 |
taaataagtgattttcatgtatatttaattttttctgtggt |
18079798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1213 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1213
Description:
Target: scaffold1213; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 804 - 841
Alignment:
| Q |
174 |
taaataagtgattttcatatatatttaattttttcttt |
211 |
Q |
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| T |
804 |
taaataagtgattttcacatttatttaattttttcttt |
841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 1409413 - 1409450
Alignment:
| Q |
174 |
taaataagtgattttcatatatatttaattttttcttt |
211 |
Q |
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| T |
1409413 |
taaataagtgattttcacatatattaaattttttcttt |
1409450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 2415461 - 2415493
Alignment:
| Q |
175 |
aaataagtgattttcatatatatttaatttttt |
207 |
Q |
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| T |
2415461 |
aaataagtgattttcatatatatttcatttttt |
2415493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 3812348 - 3812311
Alignment:
| Q |
175 |
aaataagtgattttcatatatatttaattttttctttg |
212 |
Q |
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|||||| ||||||||| ||||||||||||||||||||| |
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| T |
3812348 |
aaataaatgattttcacatatatttaattttttctttg |
3812311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 4937764 - 4937801
Alignment:
| Q |
174 |
taaataagtgattttcatatatatttaattttttcttt |
211 |
Q |
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| T |
4937764 |
taaataagtgattttcatatatattaagttttttcttt |
4937801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 36804611 - 36804574
Alignment:
| Q |
174 |
taaataagtgattttcatatatatttaattttttcttt |
211 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
36804611 |
taaataagtgattttcatatatatttggttttttcttt |
36804574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 14825629 - 14825661
Alignment:
| Q |
179 |
aagtgattttcatatatatttaattttttcttt |
211 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
14825629 |
aagtgattttcatatctatttaattttttcttt |
14825661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 19581055 - 19581019
Alignment:
| Q |
175 |
aaataagtgattttcatatatatttaattttttcttt |
211 |
Q |
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||||||||||||||||||| ||||| ||||||||||| |
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| T |
19581055 |
aaataagtgattttcatatctatttcattttttcttt |
19581019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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