View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0331_high_3 (Length: 328)
Name: NF0331_high_3
Description: NF0331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0331_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 33548952 - 33548912
Alignment:
| Q |
268 |
cttcattcattcaatttaataaataatacatcggacaacac |
308 |
Q |
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| T |
33548952 |
cttcattcattcaatttaataaataatacatcggacaacac |
33548912 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 1109169 - 1109128
Alignment:
| Q |
132 |
aatatatgctttcttcttcacatccttatacgtatttctctg |
173 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| |
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| T |
1109169 |
aatatatgctttcttcttcacatcgttatacatatttctctg |
1109128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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