View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0331_low_6 (Length: 275)
Name: NF0331_low_6
Description: NF0331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0331_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 13942942 - 13942748
Alignment:
| Q |
47 |
catcatcatccttgtccatggcatcattaactatcaactcatggtcatcaacctcatcgaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13942942 |
catcatcatccttgtccatggcatcattaactatcaactcatggtcatcaacctcatcaaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
13942843 |
T |
|
| Q |
147 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13942842 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
13942748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 15254355 - 15254549
Alignment:
| Q |
47 |
catcatcatccttgtccatggcatcattaactatcaactcatggtcatcaacctcatcgaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
146 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15254355 |
catcatcatccttgtccatggaatcattaactatcaactcatggtcatcaacctcatcaaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
15254454 |
T |
|
| Q |
147 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15254455 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
15254549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 15719987 - 15719793
Alignment:
| Q |
47 |
catcatcatccttgtccatggcatcattaactatcaactcatggtcatcaacctcatcgaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
146 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15719987 |
catcatcatccttgtccatgtcatcattaactatcaactcatggtcatcaacctcatcaaatcttccctcaacatctagtaaattcgcaggcaaatctat |
15719888 |
T |
|
| Q |
147 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15719887 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
15719793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 15215136 - 15215233
Alignment:
| Q |
47 |
catcatcatccttgtccatggcatcattaactatcaactcatggtcatcaacctcatcgaatcttccctcaacatctagtaaagtcgcaggcaaatct |
144 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15215136 |
catcatcatccttgtccatggaatcattaactatcaactcatggtcatcaacctcatcaaatcttccctcaacatctagtaaagtcacaggcaaatct |
15215233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 17003075 - 17002881
Alignment:
| Q |
47 |
catcatcatccttgtccatggcatcattaactatcaactcatggtcatcaacctcatcgaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
146 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17003075 |
catcatcatccttgtccatgggatcattaactatcaactcatggtcatcaacctcatcaaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
17002976 |
T |
|
| Q |
147 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
241 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17002975 |
gtcagctgagatgccagcaatattttgatccagaaaatcctcttgatatgcagagtcttcaacttgttgatcctcgatcacacctcttgcctttg |
17002881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 21574869 - 21574675
Alignment:
| Q |
47 |
catcatcatccttgtccatggcatcattaactatcaactcatggtcatcaacctcatcgaatcttccctcaacatctagtaaagtcgcaggcaaatctat |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21574869 |
catcatcatccttgtccatggcatcattaactagaaactcatggtcatcaacctcatcaaatcttccctcaacatctagtaaagttgcaggcaaatctat |
21574770 |
T |
|
| Q |
147 |
gtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcaatcacacctcttgcctttg |
241 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21574769 |
gtcagctgagatgccagccatattttgatccagaaaatcctcttgatatgcagagtcatcaacttgttgatcctcgatcacacctcttgcctttg |
21574675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2027 times since January 2019
Visitors: 2883