View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0333_high_14 (Length: 203)

Name: NF0333_high_14
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0333_high_14
NF0333_high_14
[»] chr2 (15 HSPs)
chr2 (33-110)||(12006525-12006602)
chr2 (33-105)||(12019323-12019395)
chr2 (33-92)||(9291559-9291618)
chr2 (33-92)||(12012999-12013058)
chr2 (33-92)||(11987937-11987996)
chr2 (33-90)||(9364238-9364295)
chr2 (33-92)||(9315640-9315699)
chr2 (33-92)||(9320592-9320651)
chr2 (33-92)||(10352731-10352790)
chr2 (50-92)||(9274200-9274242)
chr2 (33-92)||(9066083-9066142)
chr2 (53-92)||(9295107-9295146)
chr2 (33-92)||(10335427-10335486)
chr2 (33-79)||(8573993-8574039)
chr2 (56-92)||(10341043-10341079)
[»] chr3 (1 HSPs)
chr3 (33-92)||(37462091-37462150)
[»] chr1 (4 HSPs)
chr1 (33-91)||(29443774-29443832)
chr1 (42-92)||(29453747-29453797)
chr1 (33-92)||(29422934-29422993)
chr1 (57-92)||(29468238-29468273)
[»] scaffold0667 (1 HSPs)
scaffold0667 (33-92)||(4066-4125)
[»] chr4 (1 HSPs)
chr4 (33-92)||(26574517-26574576)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 12006602 - 12006525
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacatatgatg 110  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12006602 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaaatacattaacatatgatg 12006525  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 12019395 - 12019323
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacata 105  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12019395 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaatacattaacata 12019323  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9291559 - 9291618
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9291559 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 9291618  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 12013058 - 12012999
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12013058 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 12012999  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 11987996 - 11987937
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  11987996 taaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaa 11987937  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 9364238 - 9364295
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattc 90  Q
    |||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  9364238 taaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattc 9364295  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9315640 - 9315699
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||||||| || | ||||||||| ||||||||||||||||||||||||||||    
T  9315640 taaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaa 9315699  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9320592 - 9320651
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||| |||||||||| ||||||| |||||||    
T  9320592 taaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaa 9320651  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10352731 - 10352790
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||| |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  10352731 taaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 10352790  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 9274200 - 9274242
Alignment:
Q  50 ttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaa 9274242  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 9066142 - 9066083
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||||| |||||| ||||||||||||||| || |||||| |||||| |||||    
T  9066142 taaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaa 9066083  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 9295146 - 9295107
Alignment:
Q  53 agagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  9295146 agagtaattagagaacccctgtcctataataagaattcaa 9295107  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10335427 - 10335486
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||  |||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10335427 taaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaa 10335486  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 8574039 - 8573993
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctat 79  Q
    |||||||| ||| | |||||| |||||||||||||||||||||||||    
T  8574039 taaacaaaggtataaacttcaaagtaattagagaatccttgtcctat 8573993  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 10341043 - 10341079
Alignment:
Q  56 gtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  10341043 gtaattagagaatccttatcctatgataagaattcaa 10341079  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 37462091 - 37462150
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37462091 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaa 37462150  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 29443832 - 29443774
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattca 91  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  29443832 taaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattca 29443774  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 29453797 - 29453747
Alignment:
Q  42 gtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  29453797 gtagagacttcaaagtaattagagaatccttgttctataataagaattcaa 29453747  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 29422934 - 29422993
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  29422934 taaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaa 29422993  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 29468273 - 29468238
Alignment:
Q  57 taattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaa 29468238  T

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Target: scaffold0667 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 4066 - 4125
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  4066 taaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaa 4125  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 26574517 - 26574576
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||  ||| |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  26574517 taaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 26574576  T

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