View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0333_high_5 (Length: 218)
Name: NF0333_high_5
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0333_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 10299439 - 10299293
Alignment:
| Q |
48 |
caattaacaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
147 |
Q |
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| T |
10299439 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggagatctt |
10299340 |
T |
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| Q |
148 |
tttctctcaaattcctgactttgatcagttatggtggctctctgctc |
194 |
Q |
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| T |
10299339 |
tttctctcaaattcctgactttgatcagttatggtggctctctgctc |
10299293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 40204143 - 40204276
Alignment:
| Q |
56 |
aggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctttttctctc |
155 |
Q |
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| T |
40204143 |
aggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctc |
40204242 |
T |
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| Q |
156 |
aaattcctgactttgatcagttatggtggctctc |
189 |
Q |
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| T |
40204243 |
aaattccagattttgatcaaatatggtggctctc |
40204276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 40208276 - 40208409
Alignment:
| Q |
56 |
aggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctttttctctc |
155 |
Q |
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| T |
40208276 |
aggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattatattctctc |
40208375 |
T |
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| Q |
156 |
aaattcctgactttgatcagttatggtggctctc |
189 |
Q |
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| T |
40208376 |
aaattccagattttgatcaattgtggtggctctc |
40208409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 40200642 - 40200775
Alignment:
| Q |
56 |
aggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctttttctctc |
155 |
Q |
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| T |
40200642 |
aggtcaaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctc |
40200741 |
T |
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| Q |
156 |
aaattcctgactttgatcagttatggtggctctc |
189 |
Q |
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| T |
40200742 |
aaattccagattttgatcaattatggtggctctc |
40200775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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