View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0333_high_9 (Length: 211)

Name: NF0333_high_9
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0333_high_9
NF0333_high_9
[»] chr2 (26 HSPs)
chr2 (33-192)||(12006443-12006602)
chr2 (105-203)||(11987801-11987899)
chr2 (102-203)||(12012863-12012964)
chr2 (33-105)||(12019323-12019395)
chr2 (102-189)||(12019216-12019304)
chr2 (33-92)||(9291559-9291618)
chr2 (33-92)||(12012999-12013058)
chr2 (33-92)||(11987937-11987996)
chr2 (33-90)||(9364238-9364295)
chr2 (33-92)||(9315640-9315699)
chr2 (33-92)||(9320592-9320651)
chr2 (146-203)||(7115983-7116040)
chr2 (138-203)||(9328363-9328427)
chr2 (33-92)||(10352731-10352790)
chr2 (50-92)||(9274200-9274242)
chr2 (139-203)||(9284504-9284569)
chr2 (139-203)||(9294954-9295019)
chr2 (33-92)||(9066083-9066142)
chr2 (152-203)||(9274277-9274328)
chr2 (53-92)||(9295107-9295146)
chr2 (102-141)||(9315734-9315773)
chr2 (33-92)||(10335427-10335486)
chr2 (33-79)||(8573993-8574039)
chr2 (151-195)||(9315795-9315839)
chr2 (56-92)||(10341043-10341079)
chr2 (103-139)||(10371555-10371591)
[»] chr3 (1 HSPs)
chr3 (33-92)||(37462091-37462150)
[»] chr1 (5 HSPs)
chr1 (33-91)||(29443774-29443832)
chr1 (42-92)||(29453747-29453797)
chr1 (33-92)||(29422934-29422993)
chr1 (102-139)||(29443693-29443730)
chr1 (57-92)||(29468238-29468273)
[»] scaffold0667 (2 HSPs)
scaffold0667 (33-92)||(4066-4125)
scaffold0667 (102-139)||(4160-4197)
[»] chr4 (1 HSPs)
chr4 (33-92)||(26574517-26574576)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 12006602 - 12006443
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacatatgatgggtccattgaattgatattaac 132  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12006602 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaaatacattaacatatgatgggtccattgaattgatattaac 12006503  T
Q  133 ttatacataatcaataagaagtaccttcttttggtcttgcttgaatgattccccttcttc 192  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| | ||||| ||||||||    
T  12006502 ttatacataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttc 12006443  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 11987899 - 11987801
Alignment:
Q  105 atgatgggtccattgaattgatattaacttatacataatcaataagaagtaccttcttttggtcttgcttgaatgattccccttcttcctagaattatc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11987899 atgatgggtccattgaattgatattaacttatacataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatc 11987801  T

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Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 12012964 - 12012863
Alignment:
Q  102 catatgatgggtccattgaattgatattaacttatacataatcaataagaagtaccttcttttggtcttgcttgaatgattccccttcttcctagaatta 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  12012964 catatgatgggtccattgaattgatattaacttatacataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaatta 12012865  T
Q  202 tc 203  Q
    ||    
T  12012864 tc 12012863  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 12019395 - 12019323
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacata 105  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12019395 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaatacattaacata 12019323  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 12019304 - 12019216
Alignment:
Q  102 catatgatgggtccattgaattg-atattaacttatacataatcaataagaagtaccttcttttggtcttgcttgaatgattccccttc 189  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||| |||| | ||||| |||||    
T  12019304 catatgatgggtccattgaattggatgttaacttatacataatcaataagaagtaccttctcttgctctttcttgtacgattctccttc 12019216  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9291559 - 9291618
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9291559 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 9291618  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 12013058 - 12012999
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12013058 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 12012999  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 11987996 - 11987937
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  11987996 taaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaa 11987937  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 9364238 - 9364295
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattc 90  Q
    |||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  9364238 taaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattc 9364295  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9315640 - 9315699
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||||||| || | ||||||||| ||||||||||||||||||||||||||||    
T  9315640 taaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaa 9315699  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9320592 - 9320651
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||| |||||||||| ||||||| |||||||    
T  9320592 taaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaa 9320651  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 7116040 - 7115983
Alignment:
Q  146 ataagaagtaccttcttttggtcttgcttgaatgattccccttcttcctagaattatc 203  Q
    |||||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||||||    
T  7116040 ataagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatc 7115983  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 9328363 - 9328427
Alignment:
Q  138 cataatcaataagaagtaccttcttttggtcttgcttgaatgattccccttcttcctagaattatc 203  Q
    ||||||||| |||||||||||||| ||| ||||||||| | ||||| |||||||||||||||||||    
T  9328363 cataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatc 9328427  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10352731 - 10352790
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||| |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  10352731 taaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 10352790  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 9274200 - 9274242
Alignment:
Q  50 ttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaa 9274242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 9284569 - 9284504
Alignment:
Q  139 ataatcaataa-gaagtaccttcttttggtcttgcttgaatgattccccttcttcctagaattatc 203  Q
    ||||||||||| |||||||||||| ||| |||||||| || ||||| ||||||| |||||||||||    
T  9284569 ataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatc 9284504  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 9295019 - 9294954
Alignment:
Q  139 ataatcaataa-gaagtaccttcttttggtcttgcttgaatgattccccttcttcctagaattatc 203  Q
    ||||||||||| |||||||||||| ||| |||||||| || ||||| ||||||| |||||||||||    
T  9295019 ataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatc 9294954  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 9066142 - 9066083
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||||| |||||| ||||||||||||||| || |||||| |||||| |||||    
T  9066142 taaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaa 9066083  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 9274277 - 9274328
Alignment:
Q  152 agtaccttcttttggtcttgcttgaatgattccccttcttcctagaattatc 203  Q
    |||||||| | ||| ||||||||| ||||||| |||||||||||||||||||    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatc 9274328  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 9295146 - 9295107
Alignment:
Q  53 agagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  9295146 agagtaattagagaacccctgtcctataataagaattcaa 9295107  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 9315734 - 9315773
Alignment:
Q  102 catatgatgggtccattgaattgatattaacttatacata 141  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  9315734 catatgatgggtccattgaactgacattaacttatacata 9315773  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10335427 - 10335486
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||  |||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10335427 taaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaa 10335486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 8574039 - 8573993
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctat 79  Q
    |||||||| ||| | |||||| |||||||||||||||||||||||||    
T  8574039 taaacaaaggtataaacttcaaagtaattagagaatccttgtcctat 8573993  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 9315795 - 9315839
Alignment:
Q  151 aagtaccttcttttggtcttgcttgaatgattccccttcttccta 195  Q
    ||||||||||| ||| ||||||||| ||||||| |||||||||||    
T  9315795 aagtaccttctcttgttcttgcttgtatgattctccttcttccta 9315839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 10341043 - 10341079
Alignment:
Q  56 gtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  10341043 gtaattagagaatccttatcctatgataagaattcaa 10341079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 10371555 - 10371591
Alignment:
Q  103 atatgatgggtccattgaattgatattaacttataca 139  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  10371555 atatgatggatccattgaactgatattaacttataca 10371591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 37462091 - 37462150
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37462091 taaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaa 37462150  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 29443832 - 29443774
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattca 91  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  29443832 taaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattca 29443774  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 29453797 - 29453747
Alignment:
Q  42 gtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  29453797 gtagagacttcaaagtaattagagaatccttgttctataataagaattcaa 29453747  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 29422934 - 29422993
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  29422934 taaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaa 29422993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 29443730 - 29443693
Alignment:
Q  102 catatgatgggtccattgaattgatattaacttataca 139  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29443730 catatgatgggtccattgaattgatattaacttataca 29443693  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 29468273 - 29468238
Alignment:
Q  57 taattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaa 29468238  T

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Target: scaffold0667 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 4066 - 4125
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| ||||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  4066 taaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaa 4125  T

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Target: scaffold0667; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 4160 - 4197
Alignment:
Q  102 catatgatgggtccattgaattgatattaacttataca 139  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  4160 catatgatgggtccattgaacagatattaacttataca 4197  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 26574517 - 26574576
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||  ||| |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  26574517 taaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 26574576  T

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