View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0333_low_1 (Length: 424)

Name: NF0333_low_1
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0333_low_1
NF0333_low_1
[»] chr1 (2 HSPs)
chr1 (290-424)||(7304576-7304710)
chr1 (50-98)||(7304342-7304390)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 290 - 424
Target Start/End: Original strand, 7304576 - 7304710
Alignment:
Q  290 aagacaagaatccacagtgtggggaaggtcagacaagtggcaatcccaagacatataaatttgaaaaatatatatatttggtaccaaccaatgaacaaat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7304576 aagacaagaatccacagtgtggggaaggtcagacaagtggcaatcccaagacatataaatttgaaaaatatatatatttggtaccaaccaatgagcaaat 7304675  T
Q  390 tatatcattaatttatgaaagaaattgcttacttc 424  Q
    |||||||||||||||||||||||||||||||||||    
T  7304676 tatatcattaatttatgaaagaaattgcttacttc 7304710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 7304342 - 7304390
Alignment:
Q  50 agcaataattatttattttcctcatttttcagtattaatatatcatcat 98  Q
    ||||||||||| |  |||||||||||||||||| |||||||||||||||    
T  7304342 agcaataattaatatttttcctcatttttcagttttaatatatcatcat 7304390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University