View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0333_low_19 (Length: 205)

Name: NF0333_low_19
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0333_low_19
NF0333_low_19
[»] chr2 (15 HSPs)
chr2 (37-112)||(12006525-12006600)
chr2 (37-107)||(12019323-12019393)
chr2 (37-94)||(9291561-9291618)
chr2 (37-94)||(12012999-12013056)
chr2 (37-94)||(11987937-11987994)
chr2 (37-92)||(9364240-9364295)
chr2 (37-94)||(9315642-9315699)
chr2 (37-94)||(9320594-9320651)
chr2 (52-94)||(9274200-9274242)
chr2 (37-94)||(10352733-10352790)
chr2 (55-94)||(9295107-9295146)
chr2 (37-94)||(9066083-9066140)
chr2 (49-94)||(10335441-10335486)
chr2 (37-81)||(8573993-8574037)
chr2 (58-94)||(10341043-10341079)
[»] chr3 (1 HSPs)
chr3 (37-94)||(37462093-37462150)
[»] chr1 (4 HSPs)
chr1 (44-94)||(29453747-29453797)
chr1 (37-93)||(29443774-29443830)
chr1 (37-94)||(29422936-29422993)
chr1 (59-94)||(29468238-29468273)
[»] scaffold0667 (1 HSPs)
scaffold0667 (37-94)||(4068-4125)
[»] chr4 (1 HSPs)
chr4 (48-94)||(26574530-26574576)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 12006600 - 12006525
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacatatgatg 112  Q
    |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12006600 aacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaaatacattaacatatgatg 12006525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 12019393 - 12019323
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacata 107  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12019393 aacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaatacattaacata 12019323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 9291561 - 9291618
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9291561 aacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 9291618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 12013056 - 12012999
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12013056 aacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 12012999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 11987994 - 11987937
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  11987994 aacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaa 11987937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 9364240 - 9364295
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattc 92  Q
    |||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  9364240 aacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattc 9364295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 9315642 - 9315699
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| ||||||| || | ||||||||| ||||||||||||||||||||||||||||    
T  9315642 aacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaa 9315699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 9320594 - 9320651
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| |||||||||||| ||||||||||| |||||||||| ||||||| |||||||    
T  9320594 aacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaa 9320651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 9274200 - 9274242
Alignment:
Q  52 ttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaa 9274242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 10352733 - 10352790
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| ||| |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  10352733 aacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 10352790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 9295146 - 9295107
Alignment:
Q  55 agagtaattagagaatccttgtcctataataagaattcaa 94  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  9295146 agagtaattagagaacccctgtcctataataagaattcaa 9295107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 9066140 - 9066083
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| ||||| |||||| ||||||||||||||| || |||||| |||||| |||||    
T  9066140 aacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaa 9066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 10335441 - 10335486
Alignment:
Q  49 gacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10335441 gactccagagtaattagagaatcctcatcctatgataagaattcaa 10335486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 8574037 - 8573993
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctat 81  Q
    |||||| ||| | |||||| |||||||||||||||||||||||||    
T  8574037 aacaaaggtataaacttcaaagtaattagagaatccttgtcctat 8573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 10341043 - 10341079
Alignment:
Q  58 gtaattagagaatccttgtcctataataagaattcaa 94  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  10341043 gtaattagagaatccttatcctatgataagaattcaa 10341079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 37462093 - 37462150
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37462093 aacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaa 37462150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 29453797 - 29453747
Alignment:
Q  44 gtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  29453797 gtagagacttcaaagtaattagagaatccttgttctataataagaattcaa 29453747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 29443830 - 29443774
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattca 93  Q
    |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  29443830 aacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattca 29443774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 29422936 - 29422993
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| |||||||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  29422936 aacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaa 29422993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 29468273 - 29468238
Alignment:
Q  59 taattagagaatccttgtcctataataagaattcaa 94  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaa 29468238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 4068 - 4125
Alignment:
Q  37 aacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||||| ||||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  4068 aacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaa 4125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 26574530 - 26574576
Alignment:
Q  48 agacttcagagtaattagagaatccttgtcctataataagaattcaa 94  Q
    |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  26574530 agacgtcaaagtaattagagaatccttatcctatgataagaattcaa 26574576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University