View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0333_low_21 (Length: 203)

Name: NF0333_low_21
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0333_low_21
NF0333_low_21
[»] chr2 (15 HSPs)
chr2 (30-110)||(12006525-12006605)
chr2 (30-105)||(12019323-12019398)
chr2 (30-92)||(9291556-9291618)
chr2 (30-92)||(12012999-12013061)
chr2 (30-92)||(11987937-11987999)
chr2 (30-90)||(9364235-9364295)
chr2 (32-92)||(9315639-9315699)
chr2 (33-92)||(9320592-9320651)
chr2 (30-92)||(10352728-10352790)
chr2 (30-92)||(9274183-9274242)
chr2 (30-92)||(9066083-9066145)
chr2 (30-92)||(10335424-10335486)
chr2 (30-79)||(8573993-8574042)
chr2 (53-92)||(9295107-9295146)
chr2 (56-92)||(10341043-10341079)
[»] chr3 (1 HSPs)
chr3 (30-92)||(37462088-37462150)
[»] chr1 (4 HSPs)
chr1 (24-91)||(29443774-29443841)
chr1 (30-92)||(29422931-29422993)
chr1 (42-92)||(29453747-29453797)
chr1 (57-92)||(29468238-29468273)
[»] scaffold0667 (1 HSPs)
scaffold0667 (30-92)||(4063-4125)
[»] chr4 (1 HSPs)
chr4 (30-92)||(26574514-26574576)
[»] chr8 (1 HSPs)
chr8 (30-92)||(41967184-41967246)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 12006605 - 12006525
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacatatgatg 110  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12006605 acataaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaaatacattaacatatgatg 12006525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 12019398 - 12019323
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaaatacattaacata 105  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12019398 acataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaatacattaacata 12019323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 9291556 - 9291618
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9291556 acataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 9291618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 12013061 - 12012999
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12013061 acataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 12012999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 11987999 - 11987937
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  11987999 acataaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaa 11987937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 9364235 - 9364295
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattc 90  Q
    ||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  9364235 acataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattc 9364295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 9315639 - 9315699
Alignment:
Q  32 ataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||| ||||||| || | ||||||||| ||||||||||||||||||||||||||||    
T  9315639 ataaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaa 9315699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9320592 - 9320651
Alignment:
Q  33 taaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||| |||||||||||| ||||||||||| |||||||||| ||||||| |||||||    
T  9320592 taaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaa 9320651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 10352728 - 10352790
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| ||| |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  10352728 acataaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 10352790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 9274183 - 9274242
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| |||||   |||| ||||||||| ||||||||||||||||||||||||||||    
T  9274183 acataaacaaaggtaga---ttcaaagtaattagtgaatccttgtcctataataagaattcaa 9274242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 9066145 - 9066083
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| ||||| |||||| ||||||||||||||| || |||||| |||||| |||||    
T  9066145 acataaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaa 9066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 10335424 - 10335486
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| |||  |||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10335424 acataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaa 10335486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 8574042 - 8573993
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctat 79  Q
    ||||||||||| ||| | |||||| |||||||||||||||||||||||||    
T  8574042 acataaacaaaggtataaacttcaaagtaattagagaatccttgtcctat 8573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 9295146 - 9295107
Alignment:
Q  53 agagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  9295146 agagtaattagagaacccctgtcctataataagaattcaa 9295107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 10341043 - 10341079
Alignment:
Q  56 gtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  10341043 gtaattagagaatccttatcctatgataagaattcaa 10341079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 37462088 - 37462150
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37462088 acataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaa 37462150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 29443841 - 29443774
Alignment:
Q  24 acacacacataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattca 91  Q
    ||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  29443841 acacatacataaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattca 29443774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 29422931 - 29422993
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  29422931 acataaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaa 29422993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 29453797 - 29453747
Alignment:
Q  42 gtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  29453797 gtagagacttcaaagtaattagagaatccttgttctataataagaattcaa 29453747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 29468273 - 29468238
Alignment:
Q  57 taattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaa 29468238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 4063 - 4125
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| ||||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  4063 acataaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaa 4125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 26574514 - 26574576
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||  ||| |||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  26574514 acataaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 26574576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 41967246 - 41967184
Alignment:
Q  30 acataaacaaacgtagagacttcagagtaattagagaatccttgtcctataataagaattcaa 92  Q
    ||||||||||| ||| || ||||  ||||||||||||||  || |||||||||||||||||||    
T  41967246 acataaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaa 41967184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University