View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0333_low_3 (Length: 364)
Name: NF0333_low_3
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0333_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12629157 - 12628925
Alignment:
| Q |
1 |
cgagtttcttcctcaactgcgtgtaattactataaaattatgaggcctactataccataaacctagaataatcctatcaattaacaggaccagtatagga |
100 |
Q |
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| T |
12629157 |
cgagtttcttcctcaactgcgtgtaattactataaaactatgaggcctactataccataaacctagaataatcctatcaattaacatgaccagtatagga |
12629058 |
T |
|
| Q |
101 |
atgtcaattagaaacccattcctatatgttttagcatagcagcactatttcttttcttataataataatatacctctgttccttccctttttcttttcct |
200 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
12629057 |
atgccaattagaaacccattcctatatgttctagcatagcagcactatttcttttcttataataataatatacctttgttccttccctttttctgttcct |
12628958 |
T |
|
| Q |
201 |
attttaattggatgtaatttgttaagattccta |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
12628957 |
attttaattggatgtaatttgttaagattccta |
12628925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 12626779 - 12626678
Alignment:
| Q |
258 |
tccagtttattctacttttcttcaattgttgtaacataatttcctctttcacattatttttccaattgatcggtcacctcttagcttctcatcacagaat |
357 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
12626779 |
tccaatttattctacttttcttcaattgttgtaacataatttcctctttcacattatttttccaattgatcggccacctcttagcttctcatcaccgaat |
12626680 |
T |
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| Q |
358 |
ct |
359 |
Q |
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|| |
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| T |
12626679 |
ct |
12626678 |
T |
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