View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0333_low_4 (Length: 336)
Name: NF0333_low_4
Description: NF0333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0333_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 21694754 - 21695046
Alignment:
| Q |
11 |
cagagagtgcagaagaacttggcaattttaaacaagcgtactaaggggggttgctcatgcatgtgcatgctattagcagtgattggtatagtgggtttgg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21694754 |
cagagagtgcagaagaacttggcaattttaaacaaacgtactaagggcggttgctcatgcatgtgcatgctattagcagtgattggtatagtgggtttgg |
21694853 |
T |
|
| Q |
111 |
ttcttgtcatatggcttctggtcaaatatttgtagatatgaaaatacccaactcaccaaacttctccccttgtgtttatgtttctgaatgtgtgccttga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21694854 |
ttcttgtcatatggcttctggtcaaatatttgtagatatgaaaatacccaactcaccaaacttctccccttgtgtttatgtttctgaa--tgtgccttga |
21694951 |
T |
|
| Q |
211 |
aacatatcatatatataaccgaggttctttgattgttttttgtactttgccaatgacaaggaatgtattgaggtcttgaaaggctatgatatgttgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21694952 |
aacatatcatatatataaccgaggttctttgattgttttttgtactttgccaatg--atggaatgtattgaggtcttgaaaagctatgatatgttgt |
21695046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 11664128 - 11663833
Alignment:
| Q |
11 |
cagagagtgcagaagaacttggcaattttaaacaagcgtactaaggggggttgctcatgcatgtgcatgctattagcagtgattggtatagtgggtttgg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11664128 |
cagagagtgcagaagaacttggcaattttaaacaaacgtactaagggaggttgctcgtgcatgtgcatgctattagcagtgattggtatagtgggtttgg |
11664029 |
T |
|
| Q |
111 |
ttcttgtcatatggcttctggtcaaatatttgtagatatgaaaatacccaactcaccaaacttctccccttgtgtttatgtttctgaatgtgtgccttga |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11664028 |
ttcttgtcatatggcttcttgtcaaatatttgtaattatgaaaatacccaactcagcgaacttctccccttgtgtttatgtttctgaatgtgtgccttga |
11663929 |
T |
|
| Q |
211 |
aacatatcatatatataaccgaggttctttgattgttttttgtactttgccaatgacaaggaatgtattgaggtcttgaaaggctatgatatgttgt |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
11663928 |
aacatatcataaatataaccgaggttctttgattgttttttgtactttgccaatgacaaggaatgta-tgaggtcttgaaaggctatgacatgttgt |
11663833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University