View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0335-Insertion-1 (Length: 311)

Name: NF0335-Insertion-1
Description: NF0335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0335-Insertion-1
NF0335-Insertion-1
[»] chr2 (2 HSPs)
chr2 (8-311)||(17441864-17442167)
chr2 (174-306)||(17442165-17442297)
[»] chr6 (13 HSPs)
chr6 (8-308)||(33386850-33387144)
chr6 (8-222)||(33283458-33283672)
chr6 (164-311)||(33386658-33386799)
chr6 (34-166)||(33357835-33357966)
chr6 (164-293)||(33283210-33283339)
chr6 (143-221)||(33261433-33261511)
chr6 (8-110)||(33261510-33261612)
chr6 (45-122)||(33418459-33418536)
chr6 (48-122)||(33302888-33302962)
chr6 (229-308)||(33261364-33261443)
chr6 (164-221)||(33261256-33261313)
chr6 (229-311)||(33261186-33261266)
chr6 (246-308)||(33283390-33283452)
[»] scaffold0428 (3 HSPs)
scaffold0428 (8-221)||(5222-5435)
scaffold0428 (164-311)||(4957-5102)
scaffold0428 (229-308)||(5153-5232)
[»] chr1 (1 HSPs)
chr1 (199-240)||(9709770-9709811)
[»] chr8 (1 HSPs)
chr8 (199-239)||(3951598-3951638)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 17441864 - 17442167
Alignment:
Q  8 gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt 107  Q
    |||||||||||||||||||       |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17441864 gcatccatgtcatccacagaaaaaaatctcgaaccgccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttacagatgaagt 17441963  T
Q  108 ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaactgttgccaacaaggtagcactgat 207  Q
    |||||||||||||||||||       ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17441964 ttctactgaatctccacagaaaaaaatcttgaacctccatatcattggtcgattcattggtcagttcctcaacaactgttgccaacaaggtagcactgat 17442063  T
Q  208 acagacatggacaccagatacgacacggacactataagttcagatgctgacagtttggtttctgaagaagacttagatgctgtaaattcaataattgaag 307  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17442064 acagacatggacaccggatacgacacggacactataaattcagatgctaaaagtttggtttctgaagaagacttagatgctgtaaattcaattattgaag 17442163  T
Q  308 acct 311  Q
    ||||    
T  17442164 acct 17442167  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 17442165 - 17442297
Alignment:
Q  174 cctcaacaactgttgccaacaaggtagcactgatacagacatggacaccagatacgacacggacactataagttcagatgctgacagtttggtttctgaa 273  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||| |||||| ||| |||||||||||| |||||||||| ||||    
T  17442165 cctcaacaactgttgccaacaaggtagcacggatacggacatggacaccggatacaacacagacactgtaaattcagatgctgaaagtttggtttttgaa 17442264  T
Q  274 gaagacttagatgctgtaaattcaataattgaa 306  Q
    || ||||||||||||||||||||||| ||||||    
T  17442265 gaggacttagatgctgtaaattcaattattgaa 17442297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 33387144 - 33386850
Alignment:
Q  8 gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt 107  Q
    |||| ||||||||||||||       |||| |||| |||||||||||||||||  ||||||||| ||||||| | |||||||||||||||||||||||||    
T  33387144 gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagt 33387045  T
Q  108 ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaactgttgccaacaaggtagcactgat 207  Q
    |||||||||||||| ||||       |||  |||||||||||||||  || ||||||||||| |||||||||||||| |||||||||||||||||| |||    
T  33387044 ttctactgaatctcaacagaaaaaaatctcaaacctccatatcatttgtcgattcattggtcggttcctcaacaacttttgccaacaaggtagcacggat 33386945  T
Q  208 acagacatggacaccagatacgacacggacactataagttcagatgctgacagtttggtttctgaagaagacttagatgctgtaaattcaataattgaag 307  Q
    ||      | ||| ||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||||| | ||||||||||| || ||| |||||||    
T  33386944 ac------gaacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttaaattattgaag 33386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 33283672 - 33283458
Alignment:
Q  8 gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt 107  Q
    |||| ||||||||||||||       |||| |||| ||||||||||||||||| |||||||||| | ||||| ||| |||||||||||||||||||||||    
T  33283672 gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccggattcacctgttgcagatgaagt 33283573  T
Q  108 ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaactgttgccaacaaggtagcactgat 207  Q
    |||||||||||||| ||||       ||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||| ||| |||    
T  33283572 ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttgccaacaaggtaacacggat 33283473  T
Q  208 acagacatggacacc 222  Q
    || |||| |||||||    
T  33283472 acggacacggacacc 33283458  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 33386799 - 33386658
Alignment:
Q  164 ttggtcagttcctcaacaactgttgccaacaaggtagcactgatacagacatggacaccagatacgacacggacactataagttcagatgctgacagttt 263  Q
    |||||| ||||||| ||||||||||| ||||||||||||| ||||| |||||      | ||||||||||||||||| ||| |||||||||  | |||||    
T  33386799 ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggacat------ccgatacgacacggacactgtaaattcagatgccaaaagttt 33386706  T
Q  264 ggtttctgaagaagacttagatgctgtaaattcaataattgaagacct 311  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  33386705 ggtttctgaagaagacttagatgctgtaaattcaattattgaatacct 33386658  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 33357966 - 33357835
Alignment:
Q  34 tctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacagnnnnnnn 133  Q
    |||| |||| |||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  33357966 tctcaaacctccatatcagccaaagaaacagaagaatccgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacag-aaaaaa 33357868  T
Q  134 tcttgaacctccatatcattgttcaattcattg 166  Q
    ||| ||||||||||||||||| || ||||||||    
T  33357867 tctcgaacctccatatcattggtcgattcattg 33357835  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 293
Target Start/End: Complemental strand, 33283339 - 33283210
Alignment:
Q  164 ttggtcagttcctcaacaactgttgccaacaaggtagcactgatacagacatggacaccagatacgacacggacactataagttcagatgctgacagttt 263  Q
    |||||| ||||||| | ||||||||||||||||||||||| ||||| |||| ||||| |||||||||||| |||||| |||  ||||||||||| |||||    
T  33283339 ttggtcggttcctcgaaaactgttgccaacaaggtagcacggatacggacacggacatcagatacgacacagacactgtaaactcagatgctgaaagttt 33283240  T
Q  264 ggtttctgaagaagacttagatgctgtaaa 293  Q
     |||| |||||||||||| |||||||||||    
T  33283239 agtttatgaagaagacttggatgctgtaaa 33283210  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 33261511 - 33261433
Alignment:
Q  143 tccatatcattgttcaattcattggtcagttcctcaacaactgttgccaacaaggtagcactgatacagacatggacac 221  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||| ||||||    
T  33261511 tccatatcattggtcaattcattggtcggttcctcagcaactgttgccaacaaggtagcacagatacggacacggacac 33261433  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 33261612 - 33261510
Alignment:
Q  8 gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt 107  Q
    |||| ||||||||||||||       |||| |||| ||||||||||||||||| |||||||||| | ||||| |||||||||||||| ||||||||||||    
T  33261612 gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccagattcacctgctgcagatgaagt 33261513  T
Q  108 ttc 110  Q
    |||    
T  33261512 ttc 33261510  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 33418536 - 33418459
Alignment:
Q  45 catatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc 122  Q
    |||||||||||||||| | |||||||| |||||||||| ||||||||||||||| ||||||||||||  |||||||||    
T  33418536 catatcagccacagaaacggaagtatccgtggaggtacaagattcacctgttgccgatgaagtttctggtgaatctcc 33418459  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 33302962 - 33302888
Alignment:
Q  48 atcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc 122  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||   ||||||||||||| |||||||||    
T  33302962 atcagccacagaaacggaagtatctgtggaggtacaagattcacctgttatcgatgaagtttctagtgaatctcc 33302888  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 33261443 - 33261364
Alignment:
Q  229 gacacggacactataagttcagatgctgacagtttggtttctgaagaagacttagatgctgtaaattcaataattgaaga 308  Q
    |||||||||||| ||| |||||||||||| |||||||| ||| ||||||| | ||||||||||| |||||| ||||||||    
T  33261443 gacacggacactgtaaattcagatgctgaaagtttggtatctaaagaagattcagatgctgtaatttcaattattgaaga 33261364  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 33261313 - 33261256
Alignment:
Q  164 ttggtcagttcctcaacaactgttgccaacaaggtagcactgatacagacatggacac 221  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  33261313 ttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggacatggacac 33261256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 33261266 - 33261186
Alignment:
Q  229 gacacggacactataagttcagatgctgacagtttggtttctgaagaagacttagatgctgtaaattcaataattgaagacct 311  Q
    |||| ||||||| ||| |||||||||||| ||||| |||| |||||||||||| |||||||||||  |||| |||||||||||    
T  33261266 gacatggacactgtaaattcagatgctgaaagtttagtttatgaagaagacttggatgctgtaaa--caattattgaagacct 33261186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 33283452 - 33283390
Alignment:
Q  246 ttcagatgctgacagtttggtttctgaagaagacttagatgctgtaaattcaataattgaaga 308  Q
    |||||||||||| |||||||||||| | ||||| | ||||||||||| |||||| ||||||||    
T  33283452 ttcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaaga 33283390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 5435 - 5222
Alignment:
Q  8 gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt 107  Q
    |||| ||||||||||||||       |||| |||| ||||||||||||||||| | |||||||| | ||||| |||  |||||||||||||| |||||||    
T  5435 gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaactgaagtatccgcggaggcaccgaattcacctgttgcaaatgaagt 5336  T
Q  108 ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaactgttgccaacaaggtagcactgat 207  Q
    |||||||||||||| ||||       ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||    
T  5335 ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcaattcattggtcggttcctcagcaactgttgccaacaaggtagcacagat 5236  T
Q  208 acagacatggacac 221  Q
    || |||| ||||||    
T  5235 acggacacggacac 5222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 5102 - 4957
Alignment:
Q  164 ttggtcagttcctcaacaactgttgccaacaaggtagcactgatacagacatggacaccagatacgacacggacactataagttcagatgctgacagttt 263  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||| |||||| |||  ||||||||||| |||||    
T  5102 ttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggacacggacatcagatacgacacagacactgtaaactcagatgctgaaagttt 5003  T
Q  264 ggtttctgaagaagacttagatgctgtaaattcaataattgaagacct 311  Q
     |||| |||||||||||| |||||||||||  |||| |||||||||||    
T  5002 agtttttgaagaagacttggatgctgtaaa--caattattgaagacct 4957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 5232 - 5153
Alignment:
Q  229 gacacggacactataagttcagatgctgacagtttggtttctgaagaagacttagatgctgtaaattcaataattgaaga 308  Q
    |||||||||||| ||| |||||||||||| |||||||||||| | ||||| | ||||||||||| |||||| ||||||||    
T  5232 gacacggacactgtaaattcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaaga 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 9709770 - 9709811
Alignment:
Q  199 agcactgatacagacatggacaccagatacgacacggacact 240  Q
    ||||| |||||||||||||||| |||| ||||||||||||||    
T  9709770 agcacggatacagacatggacatcagacacgacacggacact 9709811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 3951638 - 3951598
Alignment:
Q  199 agcactgatacagacatggacaccagatacgacacggacac 239  Q
    ||||| ||||| |||| ||||||||||||||||||||||||    
T  3951638 agcacggatacggacacggacaccagatacgacacggacac 3951598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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