View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0335-Insertion-2 (Length: 288)
Name: NF0335-Insertion-2
Description: NF0335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0335-Insertion-2 |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 33383000 - 33383148
Alignment:
| Q |
118 |
aaaaggtggcatgggactcaaaaccacttctgagttgggtaaagagaaaaacagatattttactattattgagtgtgacgcatggatggattgaatagtg |
217 |
Q |
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| T |
33383000 |
aaaaggtggcatgggactcaaaaccacttctgagttgggtaaagagaaaaacagatattttactattattgagtgtgacgcatggatggattgaatgggg |
33383099 |
T |
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| Q |
218 |
tttgtacgtaaatgggtagatatcttgggataaattggcaaaatttggt |
266 |
Q |
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| T |
33383100 |
tttgtacgtaaatgggtagatatcttgggataaattggcaaaatttggt |
33383148 |
T |
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Target: scaffold0443 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 7125 - 7014
Alignment:
| Q |
7 |
aatccgatcattgcactggacggaaatgagttgttatttgtcagccgcggattcgatcggattgacgttttcggaccgtcatcgtccgaaaccgcccgtt |
106 |
Q |
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| T |
7125 |
aatccgatcattgcaatggacaaaaatgggttgttatttaccaaccgcgatttcgatcggattgacgttttcggaccgtcaccgtccgaaaccgcccgtt |
7026 |
T |
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| Q |
107 |
tgtccaccccta |
118 |
Q |
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| T |
7025 |
tgaccaccccta |
7014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 25306010 - 25305937
Alignment:
| Q |
7 |
aatccgatcattgcactggacggaaatgagttgttatttgtcagccgcggattcgatcggattgacgttttcgg |
80 |
Q |
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| T |
25306010 |
aatccgatcattgcactggacggaaatgggttgttatttgtcaaccgtggattcgatcggattgacgttttcgg |
25305937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 25305842 - 25305908
Alignment:
| Q |
7 |
aatccgatcattgcactggacggaaatgagttgttatttgtcagccgcggattcgatcggattgacg |
73 |
Q |
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| T |
25305842 |
aatccgatcattgcactggacggaaatgggttgttatttgtcaaccgaggattcgatcggattgacg |
25305908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 41026854 - 41026939
Alignment:
| Q |
7 |
aatccgatcattgcactggacggaaatgagttgttatttgtcagccgcggattcgatcggattgacgttttcggaccgtcatcgtc |
92 |
Q |
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| T |
41026854 |
aatccgatcattgcactggacagaaattggttgttatttgtcaaccgcagtttcgatcggattgacgttttcggaccgtcatcgtc |
41026939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 21135962 - 21135851
Alignment:
| Q |
7 |
aatccgatcattgcactggacggaaatgagttgttatttgtcagccgcggattcgatcggattgacgttttcggaccgtcatcgtccgaaaccgcccgtt |
106 |
Q |
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| T |
21135962 |
aatccgatcattgcaatggacgaaaatgggttgttatttgccaaccgcaatttcgatcggattgacattttcggaccgtcaccgtctgaaaccacccgtt |
21135863 |
T |
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| Q |
107 |
tgtccaccccta |
118 |
Q |
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|| ||| ||||| |
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| T |
21135862 |
tgaccatcccta |
21135851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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