View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0335_high_2 (Length: 388)
Name: NF0335_high_2
Description: NF0335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0335_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 7289944 - 7290280
Alignment:
| Q |
30 |
aactttgcattttatttcatgacaattatggcaaaaagcataaatattttatactttattaatgaaatgttgattgcttccatgttagttatctgatgtg |
129 |
Q |
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| T |
7289944 |
aactttgcattttattacatgacaattatggcaaaaagcataaatattttatactttattaatgaaatgttgattgcttccatgttagttatctgatgtg |
7290043 |
T |
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| Q |
130 |
tacttttatatttcttatattatgaatcttatatgtttgtagtttaatacaaacaacaacttaaaattctctatttgaatattaaagcaatggattttct |
229 |
Q |
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|||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7290044 |
tacttttatatttcttatattatgaatcctatatggtggtagtttaatacaaacaacaacttaaaattctctatttgagtattaaagcaatggattttct |
7290143 |
T |
|
| Q |
230 |
agcagctatcagttatttttctccttttattaatattcacattgtggatatattggatattaaggattgtagtgtttctttaagagtatcagtaatcaat |
329 |
Q |
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| T |
7290144 |
agcagctatcagttatttttctccttttattaatattcacattgtggatatattggatattaaggattgtagtgtttctttaagagtatcagtaatcaat |
7290243 |
T |
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| Q |
330 |
gattatattccttatattcttgatgcaagttgatgat |
366 |
Q |
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| T |
7290244 |
gattatattccttgtattcttgatgcaagttgatgat |
7290280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 34452393 - 34452469
Alignment:
| Q |
202 |
atttgaatattaaagcaat--ggattttctagcagctatcagttatttttctcc-ttttattaatattcacattgtg |
275 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
34452393 |
atttgagtattaaagcaatatggattttctagcagctatcagttatttctctccttttttttaatattcacattgtg |
34452469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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