View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0335_high_3 (Length: 332)
Name: NF0335_high_3
Description: NF0335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0335_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7808940 - 7809178
Alignment:
| Q |
1 |
tttgttttcctctcttcctcttcctccttaaacttcactctccccttcggctcatcgccgaacacaagtttatccgtccggtctcggtatttcttattcc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
7808940 |
tttgttttcctctcctcctcttcctccttaaactttattctccccttcggctcatcgccgaacaccagtttatccgtccggtctcgatatttcttattcc |
7809039 |
T |
|
| Q |
101 |
acgtcaccttcggcttttcgtcgttgttgttgagaattgggagttcatagtgagaactgtcgaaggttgcgtctgaatgttcgggttgaggatcgggttc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7809040 |
acgacaccttcggcttttcgtcgttgttgttaaggattgggatttcgtagtgagaactatcgaaggttgcgtctgaatgttcgggttgaggatcgggttc |
7809139 |
T |
|
| Q |
201 |
cggtgtgaggggttcggcggagaagaatgcgcggaagac |
239 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7809140 |
cggtgtgaggggttcggcggagaagaaagcgcggaagac |
7809178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 11941984 - 11942171
Alignment:
| Q |
52 |
tcatcgccgaacacaagtttatccgtccggtctcggtatttcttattccacgtcaccttcggcttttcgtcgttgttgttgagaattgggagttcatagt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11941984 |
tcatcgccgaacacaagtttatccgtccggtctcggtatttcttattccacgtcaccttcggcttttcgtcgttgttgttgagaattgggagttcatagt |
11942083 |
T |
|
| Q |
152 |
gagaactgtcgaaggttgcgtctgaatgttcgggttgaggatcgggttccggtgtgaggggttcggcggagaagaatgcgcggaagac |
239 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11942084 |
gcgaactgtcgaaggttgcgtctgaatgttcgggttgaggatcgggttccggtgtgaggggttcggcggagaagaaagcgcggaagac |
11942171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8552391 - 8552165
Alignment:
| Q |
1 |
tttgttttcctctcttcctcttcctccttaaacttcactctccccttcggctcatcgccgaacacaagtttatccgtccggtctcggtatttcttattcc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
8552391 |
tttgttttcctctcctcctcttcctccttaaactttattctccccttcggctcatcgccgaacaccagtttatccgttcggtctcgatatttcttattcc |
8552292 |
T |
|
| Q |
101 |
acgtcaccttcggcttttcgtcgttgttgttgagaattgggagttcatagtgagaactgtcgaaggttgcgtctgaatgttcgggttgaggatcgggttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
8552291 |
acgtcaccttcggcttttcgtcgttgttattaaggattgggatttcgtagtgagaactatcgaaggttgcgtctgaatgttcg------------ggttc |
8552204 |
T |
|
| Q |
201 |
cggtgtgaggggttcggcggagaagaatgcgcggaagac |
239 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8552203 |
cggtgtgaggggttcggcggagaagaaagcgcggaagac |
8552165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 419 times since January 2019
Visitors: 2761