View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0335_high_5 (Length: 321)

Name: NF0335_high_5
Description: NF0335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0335_high_5
NF0335_high_5
[»] chr3 (35 HSPs)
chr3 (30-311)||(38257160-38257448)
chr3 (175-247)||(43247651-43247723)
chr3 (175-247)||(4601480-4601552)
chr3 (175-247)||(7824455-7824527)
chr3 (175-247)||(29689483-29689555)
chr3 (175-247)||(51665926-51665998)
chr3 (175-242)||(475282-475348)
chr3 (175-238)||(42392806-42392869)
chr3 (175-242)||(54158326-54158393)
chr3 (177-242)||(9349679-9349744)
chr3 (175-247)||(54151682-54151754)
chr3 (176-247)||(1778906-1778977)
chr3 (175-242)||(36228995-36229062)
chr3 (180-247)||(55018040-55018107)
chr3 (175-240)||(3112996-3113061)
chr3 (175-247)||(28844559-28844632)
chr3 (175-247)||(47635006-47635078)
chr3 (175-242)||(51054761-51054828)
chr3 (175-242)||(52500898-52500965)
chr3 (175-241)||(28458723-28458789)
chr3 (179-224)||(27230744-27230789)
chr3 (173-242)||(35461478-35461547)
chr3 (175-240)||(43775285-43775350)
chr3 (175-247)||(33334663-33334735)
chr3 (175-227)||(55320401-55320453)
chr3 (175-225)||(32001425-32001475)
chr3 (173-227)||(40756726-40756780)
chr3 (177-242)||(7958629-7958694)
chr3 (183-239)||(448884-448940)
chr3 (175-211)||(2590811-2590847)
chr3 (177-220)||(35716995-35717038)
chr3 (190-244)||(43023693-43023747)
chr3 (177-227)||(53182808-53182858)
chr3 (175-227)||(29750696-29750747)
chr3 (175-215)||(41377666-41377706)
[»] chr5 (27 HSPs)
chr5 (175-247)||(12257411-12257483)
chr5 (175-247)||(21018278-21018350)
chr5 (175-247)||(31909386-31909458)
chr5 (175-247)||(35317698-35317770)
chr5 (177-242)||(1191543-1191608)
chr5 (175-240)||(23262606-23262671)
chr5 (175-247)||(13204012-13204084)
chr5 (175-239)||(29265938-29266002)
chr5 (198-247)||(9576985-9577034)
chr5 (177-242)||(17984745-17984810)
chr5 (175-239)||(11124715-11124779)
chr5 (175-227)||(32143415-32143467)
chr5 (175-241)||(4824940-4825006)
chr5 (177-247)||(40177679-40177749)
chr5 (175-247)||(8734051-8734124)
chr5 (175-227)||(2971059-2971111)
chr5 (173-229)||(3386892-3386948)
chr5 (177-239)||(6021055-6021117)
chr5 (175-227)||(2786346-2786397)
chr5 (175-231)||(19181782-19181837)
chr5 (183-247)||(27721486-27721550)
chr5 (175-227)||(28423243-28423295)
chr5 (175-209)||(17465170-17465204)
chr5 (179-228)||(28591355-28591404)
chr5 (175-215)||(4925673-4925713)
chr5 (175-227)||(35546008-35546060)
chr5 (177-241)||(41580078-41580142)
[»] chr2 (37 HSPs)
chr2 (175-247)||(34460424-34460496)
chr2 (175-247)||(42025725-42025798)
chr2 (175-247)||(11816551-11816624)
chr2 (175-247)||(10639607-10639679)
chr2 (175-247)||(23839914-23839986)
chr2 (175-247)||(29659219-29659291)
chr2 (175-247)||(33083555-33083627)
chr2 (175-247)||(37197611-37197683)
chr2 (175-243)||(45125166-45125234)
chr2 (175-242)||(19048814-19048881)
chr2 (175-242)||(19537367-19537434)
chr2 (177-247)||(11708733-11708803)
chr2 (175-247)||(26605679-26605751)
chr2 (175-247)||(27137919-27137991)
chr2 (175-227)||(39831445-39831497)
chr2 (177-247)||(4800931-4801001)
chr2 (176-241)||(20497592-20497657)
chr2 (175-244)||(33001760-33001829)
chr2 (175-247)||(11459770-11459842)
chr2 (175-227)||(42578243-42578295)
chr2 (175-247)||(43778469-43778541)
chr2 (175-242)||(4851380-4851447)
chr2 (177-240)||(16654425-16654488)
chr2 (177-243)||(43684128-43684194)
chr2 (175-240)||(34239821-34239886)
chr2 (175-247)||(39535535-39535607)
chr2 (175-242)||(7275887-7275954)
chr2 (175-244)||(21312263-21312330)
chr2 (175-215)||(13106452-13106492)
chr2 (175-247)||(19816275-19816347)
chr2 (175-215)||(38440198-38440238)
chr2 (177-227)||(7349173-7349223)
chr2 (175-225)||(44181888-44181938)
chr2 (176-217)||(15782674-15782715)
chr2 (195-235)||(12366795-12366835)
chr2 (175-215)||(34234615-34234655)
chr2 (177-241)||(40786212-40786276)
[»] chr1 (38 HSPs)
chr1 (174-247)||(35945852-35945925)
chr1 (175-239)||(13109833-13109897)
chr1 (175-247)||(41808257-41808329)
chr1 (177-242)||(2088908-2088973)
chr1 (175-247)||(5055789-5055861)
chr1 (175-247)||(28455929-28456001)
chr1 (175-247)||(32007129-32007201)
chr1 (175-247)||(41761412-41761484)
chr1 (175-247)||(45813012-45813084)
chr1 (175-242)||(29994384-29994451)
chr1 (175-242)||(41039304-41039371)
chr1 (175-241)||(778635-778701)
chr1 (175-240)||(192477-192542)
chr1 (175-227)||(4066036-4066088)
chr1 (175-247)||(26032856-26032928)
chr1 (175-247)||(35110100-35110172)
chr1 (175-247)||(48660077-48660149)
chr1 (177-236)||(13183179-13183238)
chr1 (175-242)||(49783767-49783834)
chr1 (175-239)||(20811-20875)
chr1 (175-247)||(5943736-5943808)
chr1 (175-247)||(39276405-39276477)
chr1 (177-239)||(7275744-7275806)
chr1 (175-228)||(26264537-26264590)
chr1 (175-227)||(7059542-7059594)
chr1 (175-235)||(13097371-13097431)
chr1 (175-239)||(21939005-21939069)
chr1 (184-231)||(3716682-3716729)
chr1 (175-217)||(4062936-4062978)
chr1 (179-229)||(25931162-25931212)
chr1 (178-247)||(50106200-50106269)
chr1 (175-215)||(9886893-9886933)
chr1 (175-218)||(11688347-11688390)
chr1 (185-231)||(39112005-39112050)
chr1 (175-242)||(46447374-46447445)
chr1 (210-247)||(29587307-29587344)
chr1 (175-224)||(32982351-32982400)
chr1 (191-227)||(16770173-16770209)
[»] chr4 (48 HSPs)
chr4 (175-247)||(1174006-1174078)
chr4 (175-247)||(12735486-12735558)
chr4 (175-247)||(238459-238531)
chr4 (175-247)||(19673930-19674002)
chr4 (175-247)||(26424859-26424931)
chr4 (175-247)||(34739335-34739407)
chr4 (175-247)||(43139907-43139979)
chr4 (175-247)||(45874110-45874182)
chr4 (175-242)||(31015042-31015109)
chr4 (175-242)||(52171991-52172058)
chr4 (175-247)||(28798389-28798461)
chr4 (175-247)||(53457879-53457951)
chr4 (175-247)||(54768433-54768505)
chr4 (175-242)||(19225319-19225386)
chr4 (173-247)||(55214707-55214781)
chr4 (178-247)||(19814160-19814229)
chr4 (175-227)||(1966625-1966677)
chr4 (175-247)||(23417484-23417556)
chr4 (175-247)||(29581045-29581116)
chr4 (175-242)||(18257389-18257456)
chr4 (175-242)||(19849504-19849571)
chr4 (177-224)||(23532125-23532172)
chr4 (175-228)||(51287675-51287729)
chr4 (175-228)||(16555381-16555434)
chr4 (178-239)||(23710337-23710398)
chr4 (183-240)||(39807906-39807963)
chr4 (175-243)||(2075564-2075632)
chr4 (179-247)||(22608040-22608108)
chr4 (175-243)||(33770627-33770695)
chr4 (174-234)||(48822881-48822941)
chr4 (175-239)||(55400291-55400355)
chr4 (175-246)||(37620673-37620744)
chr4 (174-236)||(516456-516518)
chr4 (175-225)||(1125964-1126014)
chr4 (177-247)||(2864751-2864821)
chr4 (175-225)||(12867918-12867968)
chr4 (184-242)||(37134108-37134166)
chr4 (175-217)||(50347330-50347372)
chr4 (175-244)||(12767145-12767214)
chr4 (179-240)||(24517988-24518049)
chr4 (175-224)||(50033460-50033509)
chr4 (187-227)||(41001535-41001575)
chr4 (175-239)||(52768302-52768365)
chr4 (175-213)||(11278067-11278105)
chr4 (187-228)||(37395698-37395739)
chr4 (175-224)||(50035970-50036019)
chr4 (173-213)||(2804609-2804649)
chr4 (184-224)||(41679452-41679492)
[»] scaffold0352 (1 HSPs)
scaffold0352 (175-242)||(8944-9011)
[»] chr7 (44 HSPs)
chr7 (173-247)||(43753752-43753827)
chr7 (175-244)||(48444153-48444222)
chr7 (175-247)||(4106793-4106865)
chr7 (175-247)||(4107364-4107436)
chr7 (175-247)||(25112248-25112320)
chr7 (175-247)||(31770533-31770605)
chr7 (175-247)||(47557836-47557908)
chr7 (175-267)||(11355850-11355950)
chr7 (175-242)||(23358245-23358312)
chr7 (177-247)||(44083995-44084065)
chr7 (175-247)||(2146691-2146763)
chr7 (175-239)||(8439141-8439205)
chr7 (175-247)||(25546276-25546348)
chr7 (175-239)||(38781209-38781273)
chr7 (175-247)||(40058293-40058365)
chr7 (175-247)||(41183870-41183942)
chr7 (175-247)||(47570719-47570791)
chr7 (175-242)||(5587340-5587407)
chr7 (175-242)||(5592301-5592368)
chr7 (181-247)||(27229484-27229551)
chr7 (175-244)||(29484756-29484825)
chr7 (175-247)||(5772820-5772892)
chr7 (175-247)||(28603066-28603138)
chr7 (175-247)||(48146808-48146880)
chr7 (175-225)||(27915581-27915631)
chr7 (175-247)||(7162791-7162861)
chr7 (175-224)||(19630669-19630718)
chr7 (175-244)||(31288225-31288294)
chr7 (175-247)||(35309909-35309981)
chr7 (184-227)||(34763517-34763560)
chr7 (175-218)||(47250252-47250295)
chr7 (177-239)||(15634882-15634944)
chr7 (175-241)||(25872824-25872890)
chr7 (175-244)||(10220474-10220542)
chr7 (178-227)||(38033804-38033853)
chr7 (179-240)||(39513988-39514049)
chr7 (175-215)||(42081620-42081660)
chr7 (195-239)||(46427423-46427467)
chr7 (177-239)||(23036208-23036268)
chr7 (175-241)||(32606331-32606397)
chr7 (175-224)||(35577877-35577926)
chr7 (175-215)||(4001845-4001885)
chr7 (175-215)||(40657616-40657656)
chr7 (175-247)||(43203361-43203433)
[»] scaffold1348 (1 HSPs)
scaffold1348 (175-247)||(863-935)
[»] scaffold0032 (1 HSPs)
scaffold0032 (175-247)||(56536-56608)
[»] chr8 (39 HSPs)
chr8 (175-247)||(3822451-3822523)
chr8 (175-247)||(6602519-6602591)
chr8 (175-247)||(6677972-6678044)
chr8 (175-247)||(32333169-32333241)
chr8 (175-247)||(35779498-35779570)
chr8 (175-241)||(1341-1407)
chr8 (175-241)||(1078649-1078715)
chr8 (177-242)||(7813382-7813447)
chr8 (175-247)||(70524-70596)
chr8 (175-247)||(4530983-4531055)
chr8 (181-241)||(5385399-5385459)
chr8 (175-247)||(28817311-28817383)
chr8 (174-267)||(41849232-41849332)
chr8 (175-247)||(42885229-42885301)
chr8 (175-242)||(13891150-13891217)
chr8 (175-242)||(45264641-45264708)
chr8 (175-221)||(29425432-29425478)
chr8 (177-227)||(31532128-31532178)
chr8 (175-244)||(9775043-9775112)
chr8 (174-227)||(40911295-40911348)
chr8 (175-240)||(42192640-42192705)
chr8 (175-227)||(31695270-31695322)
chr8 (175-242)||(7792721-7792788)
chr8 (175-224)||(9292096-9292145)
chr8 (175-227)||(39303384-39303437)
chr8 (175-244)||(39435340-39435409)
chr8 (175-242)||(18752401-18752468)
chr8 (175-241)||(10963243-10963307)
chr8 (175-242)||(31969721-31969788)
chr8 (175-240)||(6099634-6099699)
chr8 (175-236)||(14400781-14400842)
chr8 (173-224)||(7403694-7403744)
chr8 (175-225)||(20269607-20269657)
chr8 (175-225)||(21056236-21056286)
chr8 (175-224)||(42364703-42364752)
chr8 (175-224)||(44124104-44124153)
chr8 (175-242)||(12534721-12534786)
chr8 (175-227)||(33731465-33731517)
chr8 (177-225)||(40932786-40932834)
[»] chr6 (20 HSPs)
chr6 (179-247)||(21000747-21000815)
chr6 (175-247)||(33621549-33621621)
chr6 (175-242)||(28322992-28323059)
chr6 (175-236)||(19145536-19145597)
chr6 (175-227)||(21037365-21037417)
chr6 (175-247)||(33704271-33704343)
chr6 (175-242)||(361071-361138)
chr6 (175-242)||(4464187-4464254)
chr6 (175-227)||(24619080-24619132)
chr6 (175-227)||(29009651-29009703)
chr6 (175-227)||(35218641-35218693)
chr6 (177-239)||(7014313-7014375)
chr6 (175-247)||(16518478-16518548)
chr6 (175-239)||(22576244-22576308)
chr6 (179-241)||(2959210-2959272)
chr6 (175-227)||(32289420-32289472)
chr6 (182-225)||(10999416-10999459)
chr6 (175-241)||(7487269-7487331)
chr6 (175-227)||(11456048-11456100)
chr6 (175-227)||(28592129-28592181)
[»] scaffold0119 (2 HSPs)
scaffold0119 (175-242)||(13952-14019)
scaffold0119 (175-242)||(19632-19699)
[»] scaffold0038 (1 HSPs)
scaffold0038 (175-242)||(114312-114379)
[»] scaffold0053 (1 HSPs)
scaffold0053 (175-247)||(22218-22290)
[»] scaffold0044 (1 HSPs)
scaffold0044 (175-242)||(9974-10041)
[»] scaffold0360 (2 HSPs)
scaffold0360 (187-242)||(14727-14784)
scaffold0360 (174-217)||(14590-14633)
[»] scaffold0067 (1 HSPs)
scaffold0067 (175-243)||(34877-34946)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 38257160 - 38257448
Alignment:
Q  30 ttgtatgaatatctttggtcactcgattacttttacaatgactgtatctccatttttagcaacnnnnnnnnnnaacagctcatttttagcaccattaata 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  38257160 ttgtatgaatatctttggtcactcgattacttttacaatgactgtatctccatttttagcaacttttttttt-aacagctcatttttagcaccattaata 38257258  T
Q  130 ttgcttatccagaagtaagtattcttttgttactcnnnnnnnatatcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttc 229  Q
    ||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  38257259 ttgcttatcaagaagtaagtattcttttgttactctttttttatatcttagatgaagtggtaatccgctgaaattaaactcacacacaattgtgaggttc 38257358  T
Q  230 tgggttcgaacccag--------gtccgaccttgcaatttcggcatctataacttcttgacttcttttgttacttctaattgtagaataa 311  Q
    |||||||||||||||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38257359 tgggttcgaacccaggtcacgacgtccgaccttgcaatttcgacatctataacttcttgacttcttttgttacttctaattgtagaataa 38257448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 43247651 - 43247723
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||||||||    
T  43247651 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtc 43247723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 4601552 - 4601480
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||| ||||    
T  4601552 tcttagatgaactggtaatccactgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtc 4601480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 7824455 - 7824527
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  7824455 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 7824527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 29689483 - 29689555
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  29689483 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 29689555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 51665926 - 51665998
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||| |||| | |||||||||||||||||    
T  51665926 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccgggttcgaacccaggtc 51665998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 475282 - 475348
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||    
T  475282 tcttagatgaagtggtaattcactgaa-ttaaactcacacacaactgtgaggttccgagttcgaaccc 475348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 42392806 - 42392869
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcga 238  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||    
T  42392806 tcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccgggttcga 42392869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 54158393 - 54158326
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  54158393 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 54158326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 9349679 - 9349744
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  9349679 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 9349744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 54151682 - 54151754
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| |||||||| |||||| |||||||| | |||||||||||| ||||    
T  54151682 tcttagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtc 54151754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 1778977 - 1778906
Alignment:
Q  176 cttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||||||| || ||||| |||| ||| ||||||||||||||||| |||||||||||| ||||    
T  1778977 cttagatgaagtggtaatccattgaaaataaattcaaacacaattgtgaggttccgggttcgaacccgggtc 1778906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 36228995 - 36229062
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| || ||||| ||||||||||||||| |||||||| | ||||||||||||    
T  36228995 tcttagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 36229062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 55018040 - 55018107
Alignment:
Q  180 gatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  55018040 gatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 55018107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 3112996 - 3113061
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||| | | ||||||||||    
T  3112996 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaac 3113061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 28844632 - 28844559
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaat-taaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||| ||||||||||  ||||||||||| ||||    
T  28844632 tcttagatgaagtggtaatccactgaaaaataaactcacacacaactgtgaggttccaggttcgaacccgggtc 28844559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 47635006 - 47635078
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||||||||  |||||||||||||| ||||| || || ||||| |||| ||||||||||||||    
T  47635006 tcttagatgaagtggtaatcaactgaaattaaacttacacataactgcgaggtcctggattcgaacccaggtc 47635078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 51054828 - 51054761
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||| |||||||||| ||| |||||| ||||||| || ||||||||||    
T  51054828 tcttagatgaagtggtaatccacttaaattaaacttacaaacaattatgaggttttgagttcgaaccc 51054761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 52500965 - 52500898
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||||||||||||  ||||||| ||||||||||||||| |||||||||   |||||||||||    
T  52500965 tcttagatgaagtggtaatctactgaaaataaactcacacacaactgtgaggtttcaggttcgaaccc 52500898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 28458789 - 28458723
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    |||||||||||||||||||| | |||| ||||||| |||| ||| ||||||||||||||||| ||||    
T  28458789 tcttagatgaagtggtaatttattgaagttaaacttacacgcaactgtgaggttctgggttcaaacc 28458723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 27230789 - 27230744
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  27230789 agatgaagtggtaattcactgaaattaaattcacacacaactgtga 27230744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 35461478 - 35461547
Alignment:
Q  173 tatcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||| || ||||  || |||| ||||||||||||||| |||||||||| ||||||||||||    
T  35461478 tatcttagatgaaatgataatctacagaaaataaactcacacacaactgtgaggttccgggttcgaaccc 35461547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 43775350 - 43775285
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||||||||||| ||||||||||||||||| | |||| |||||| ||| || |||||||    
T  43775350 tcttagatgaagtggtaatccactgaaattaaactcaaatacaactgtgagattccggattcgaac 43775285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 33334735 - 33334663
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||| |||||||| ||||  ||||||||||||||||||||||| |||||||| | || ||||||| ||||||    
T  33334735 tcttatatgaagtgataatctactgaaattaaactcacacacaactgtgaggtcccggattcgaactcaggtc 33334663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 55320401 - 55320453
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| | ||||||    
T  55320401 tcttagatgaagtggtaatccactgaaaataaactcacacacaactatgaggt 55320453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 32001425 - 32001475
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||| ||||||    
T  32001425 tcttatatgaagtggtaaatcactgaaaataaactcacacacaactgtgag 32001475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 40756726 - 40756780
Alignment:
Q  173 tatcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||||   ||||||||||||||||||| ||| ||||||||    
T  40756726 tatcttagatgaagtggtaaactactgaaattaaactcacacgcaactgtgaggt 40756780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 7958694 - 7958629
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||| |||| ||| |||||| ||||| || |||||||| | ||||||||||||    
T  7958694 ttagatgaagtggtaatccactaaaaataaacttacacataactgtgaggtcccgggttcgaaccc 7958629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 448884 - 448940
Alignment:
Q  183 gaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||| |||| |||||||||||||| |||| |||||||| || ||||||||    
T  448884 gaagtggtaatccactaaaattaaactcacaaacaactgtgaggtcctaggttcgaa 448940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 2590811 - 2590847
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactca 211  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2590811 tcttagatgaagtggtaatccactgaaattaaactca 2590847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 35717038 - 35716995
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaatt 220  Q
    |||||||||||||||| ||| | |||||||||||||||||||||    
T  35717038 ttagatgaagtggtaaatcattaaaattaaactcacacacaatt 35716995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 43023747 - 43023693
Alignment:
Q  190 taattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    |||| |||| |||||||||||||||| || |||||||||| || |||||||||||    
T  43023747 taatccacttaaattaaactcacacataaatgtgaggttccggattcgaacccag 43023693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 53182858 - 53182808
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||  | || |||||||||||||||| |||||||||||    
T  53182858 ttagatgaagtggtaaacccctaaaattaaactcacacataattgtgaggt 53182808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 29750747 - 29750696
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| ||||| |||| ||||||| ||||| ||||||||    
T  29750747 tcttagatgaagtggtaatccactg-aatttaactcacgcacaaatgtgaggt 29750696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 41377706 - 41377666
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  41377706 tcttagatgaagtggtaatccgctgaaaataaactcacaca 41377666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 12257483 - 12257411
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  12257483 tcttagatgaagtggtaatccactgaaaataaactcacacacaattatgaggtcctgggttcgaacccaggtc 12257411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 21018350 - 21018278
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  21018350 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 21018278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 31909386 - 31909458
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  31909386 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 31909458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 35317698 - 35317770
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||| ||||||||    
T  35317698 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaccccaggtc 35317770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 1191543 - 1191608
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  1191543 ttagatgaagttgtaagccactgaaattaaactcacacacaattgtgaggtcccgggttcgaaccc 1191608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 23262671 - 23262606
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||||| |||||||||    
T  23262671 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggttctaggttcgaac 23262606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 13204084 - 13204012
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| |||||||||||| || |||||||| | |||||||||||| ||||    
T  13204084 tcttagatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtc 13204012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 29266002 - 29265938
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||    
T  29266002 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaa 29265938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 9576985 - 9577034
Alignment:
Q  198 tgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  9576985 tgaaattaaactcacatacaactgtgaggttctgggttcgaacccaggtc 9577034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 17984745 - 17984810
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||||| |||  |||| ||||||||||||||||||| |||||||||| ||||||||||||    
T  17984745 ttagatgaagtgataagccactaaaattaaactcacacacaactgtgaggttccgggttcgaaccc 17984810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 11124779 - 11124715
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||| |||| ||||||||| |||| | |||| ||||||||||||||||||    
T  11124779 tcttagatgaagtggtaatccactcaaattaaacccacataaaattatgaggttctgggttcgaa 11124715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 32143415 - 32143467
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  32143415 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggt 32143467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 4824940 - 4825006
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||||||||||| || ||||| ||||||||||||||| |||||||| | ||||| |||||    
T  4824940 tcttagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccgggtttgaacc 4825006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 40177749 - 40177679
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||| |||||||| |||||||||||||||  |||| |||| ||||| ||| |||||||    
T  40177749 ttagatgaagtggtaatccactgaaaataaactcacacacaacggtgaagttccgggttggaatccaggtc 40177679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 8734124 - 8734051
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaatt-aaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| ||||||| || ||||||||  |||| |||||||||| ||||||||||| |||||    
T  8734124 tcttagatgaagtggtaatccactgaagttaaaactcacgtacaactgtgaggttccgggttcgaacctaggtc 8734051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 2971111 - 2971059
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||    
T  2971111 tcttagatgaagtggtaatccaccgaaaataaactcacacacaactgtgaggt 2971059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 3386892 - 3386948
Alignment:
Q  173 tatcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttc 229  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||| | ||||||||    
T  3386892 tatcttagaagaagtggtaatccactgaaattaaattcacacacaactttgaggttc 3386948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 6021117 - 6021055
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    |||||| |||||||||| |||||||| ||||||||||||||| || ||||| | |||||||||    
T  6021117 ttagataaagtggtaatccactgaaaataaactcacacacaactgagaggtcccgggttcgaa 6021055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 2786397 - 2786346
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||    
T  2786397 tcttagatgaagtggtaatccactg-aattaaactcatacacaactgtgaggt 2786346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 19181837 - 19181782
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctg 231  Q
    ||||| |||||||| |||| |||||||||||||||||||||||| ||||| ||||||    
T  19181837 tcttaaatgaagtg-taatccactgaaattaaactcacacacaactgtgatgttctg 19181782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 27721550 - 27721486
Alignment:
Q  183 gaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||| ||||||||||||| ||||| |||| |||||||| | |||||| ||||| ||||    
T  27721550 gaagtggtaatccactgaaattaaattcacatacaactgtgaggtcccgggttcaaacccgggtc 27721486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 28423243 - 28423295
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||| |||||||  | |||||| |||||||||||||||||||||||    
T  28423243 tcttagatgaaatggtaatatagtgaaataaaactcacacacaattgtgaggt 28423295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 17465204 - 17465170
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaact 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  17465204 tcttagatgaagtggtaatccactgaaattaaact 17465170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 28591355 - 28591404
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtgaggtt 228  Q
    ||||||||||||||  |||||| |||||||||| |||||| |||||||||    
T  28591355 agatgaagtggtaaaccactgacattaaactcatacacaactgtgaggtt 28591404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 4925713 - 4925673
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  4925713 tcttagatgaagtggtaaaccactgaaattaaacttacaca 4925673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 35546060 - 35546008
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||| |||| |||| ||||||||| |||| |||| ||||||||    
T  35546060 tcttagatgaagtgataatccacttaaattaaacccacatacaactgtgaggt 35546008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 41580078 - 41580142
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||||||||| || | |||||||||  |||||||| |||||||||  || ||||||||    
T  41580078 ttagatgaagtggtaatccattaaaattaaacctacacacaactgtgaggtttcggattcgaacc 41580142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 34460496 - 34460424
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  34460496 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttctgggttcgaacccgggtc 34460424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 42025798 - 42025725
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaa-actcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  42025798 tcttagatgaagtggtagtccactgaaattaagactcacacacaattgtgaggttctgggttcgaactcaggtc 42025725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 11816551 - 11816624
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaa-ctcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||    
T  11816551 tcttagatgaagtggtaatccactgaaattaaaactcacatacaactgtgaggttccgggttcgaacccaggtc 11816624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 10639607 - 10639679
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  10639607 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 10639679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 23839986 - 23839914
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |  ||||||||||||||||    
T  23839986 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccaggttcgaacccaggtc 23839914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 29659219 - 29659291
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||  ||||||||||||| ||||    
T  29659219 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcatgggttcgaacccgggtc 29659291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 33083555 - 33083627
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  33083555 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 33083627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 37197611 - 37197683
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  37197611 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 37197683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 45125166 - 45125234
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccca 243  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| | |||||||||||    
T  45125166 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttccgagttcgaaccca 45125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 19048881 - 19048814
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||| | ||||||||||||    
T  19048881 tcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaaccc 19048814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 19537434 - 19537367
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  19537434 tcttagatgaagtggtaatccactgaaaataaacacacacacaactgtgaggttccgggttcgaaccc 19537367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 11708803 - 11708733
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||| |||||||| ||||| ||||||||| |||||||| |||||||||||||| ||||    
T  11708803 ttagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcctgggttcgaacccgggtc 11708733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 26605751 - 26605679
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| |||| |||||||||| |||||||| | |||||||||||| ||||    
T  26605751 tcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcccgggttcgaacccgggtc 26605679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 27137919 - 27137991
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| ||||||||||||||||||| | || ||| |||| | |||||||||||||||||    
T  27137919 tcttagatgaagtggtaatccactgaaattaaactcacataaaactgtaaggtcccgggttcgaacccaggtc 27137991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 39831445 - 39831497
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  39831445 tcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggt 39831497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 4801001 - 4800931
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||||||| ||||||||||||||| ||  | ||||||| |||||||||| ||||||    
T  4801001 ttagatgaagtggtaattcactggaattaaactcacacataaccgcgaggttccgggttcgaactcaggtc 4800931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 20497592 - 20497657
Alignment:
Q  176 cttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    |||||||||||||||||  ||||||||| ||||||||| ||||||||||||||| ||||| |||||    
T  20497592 cttagatgaagtggtaaaccactgaaataaaactcacatacaattgtgaggttccgggtttgaacc 20497657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 33001829 - 33001760
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||||||||| ||||||| ||||||||||||||||||| | || |||||||| ||| ||||||||||||    
T  33001829 tcttagatgaaatggtaatccactgaaattaaactcacatataactgtgaggtcctgtgttcgaacccag 33001760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 11459842 - 11459770
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| || ||||| ||||| ||||||||| |||||||| | |||||||||||| ||||    
T  11459842 tcttagatgaagtggtaatccattgaaaataaacacacacacaactgtgaggtcccgggttcgaacccgggtc 11459770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 42578295 - 42578243
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  42578295 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggt 42578243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 43778469 - 43778541
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| || ||||| ||||||||||||||| ||||| ||  | ||||||||||||||||    
T  43778469 tcttagatgaagtggtaatccaatgaaaataaactcacacacaactgtgaagtcttaggttcgaacccaggtc 43778541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 4851447 - 4851380
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||| |||||||||||||| |||| ||||||||||||||||||| |||||||| | ||||| ||||||    
T  4851447 tcttggatgaagtggtaatccactaaaattaaactcacacacaactgtgaggtcccgggtttgaaccc 4851380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 16654488 - 16654425
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    |||||||||| || |||||||| ||| ||||||||||||||| |||||||||| ||||||||||    
T  16654488 ttagatgaaggggcaattcactaaaaataaactcacacacaactgtgaggttccgggttcgaac 16654425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 43684194 - 43684128
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccca 243  Q
    ||||||||||||||||| || ||||| |||||||||||| ||||||| ||| | |||||||||||||    
T  43684194 ttagatgaagtggtaatccagtgaaaataaactcacacataattgtggggtcccgggttcgaaccca 43684128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 34239821 - 34239886
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||| |||||||||||||| | |||||||||||||| |||||| ||| |||||||| ||||||||    
T  34239821 tcttaaatgaagtggtaatttattgaaattaaactcatacacaactgtaaggttctgagttcgaac 34239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 39535535 - 39535607
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| | || |||||||||||||| | || |||||||| | |||||||||||| ||||    
T  39535535 tcttagatgaagtggtaatccgctcaaattaaactcacataaaactgtgaggtcccgggttcgaacccgggtc 39535607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 7275887 - 7275954
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| || | |||||||| | |||||||| |||||||| | ||||||||||||    
T  7275887 tcttagatgaagtggtaatccattaaaattaaatttacacacaactgtgaggtcccgggttcgaaccc 7275954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 21312330 - 21312263
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    |||||||||||||||||||||||| ||| ||||||||  |||||||||||||| |  ||||||| |||||    
T  21312330 tcttagatgaagtggtaattcactaaaaataaactca--cacaattgtgaggtcccaggttcgatcccag 21312263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 13106492 - 13106452
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  13106492 tcttagatgaagtggtaaatcactgaaataaaactcacaca 13106452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 19816347 - 19816275
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||| |||||  ||||||| |||||||| |||||| || ||||||| |||||| ||||| ||||    
T  19816347 tcttagatgaagttgtaatctactgaaaataaactcatacacaactgcgaggttccgggttcaaacccgggtc 19816275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 38440198 - 38440238
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  38440198 tcttagatgaagtggtaatccactaaaattaaactcacaca 38440238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 7349223 - 7349173
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||| || |||| |||||||||||||||| | |||||||||    
T  7349223 ttagatgaagtggtgatccactaaaattaaactcacacatagttgtgaggt 7349173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 44181888 - 44181938
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    |||||||| ||||| |||| |||||||| ||||||||||||||| ||||||    
T  44181888 tcttagattaagtgataatccactgaaaataaactcacacacaactgtgag 44181938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 15782715 - 15782674
Alignment:
Q  176 cttagatgaagtggtaattcactgaaattaaactcacacaca 217  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  15782715 cttagatgaagtggtaaaccactgaaattaaactcccacaca 15782674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 12366835 - 12366795
Alignment:
Q  195 cactgaaattaaactcacacacaattgtgaggttctgggtt 235  Q
    |||||| ||||||||||||||||| |||||||||| |||||    
T  12366835 cactgatattaaactcacacacaactgtgaggttccgggtt 12366795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 34234655 - 34234615
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  34234655 tcttagatgaagtggtgatctactgaaattaaactcacaca 34234615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 40786212 - 40786276
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||| |||||| ||||||||| ||||||||||||||| ||| || |||||  | ||||||||||    
T  40786212 ttagaagaagtgataattcactaaaattaaactcacactcaactgcgaggtcttaggttcgaacc 40786276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 35945925 - 35945852
Alignment:
Q  174 atcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||||||||| |||||||| |||| |||||||||| |||||||||| |||||||||||||||||    
T  35945925 atcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggttccgggttcgaacccaggtc 35945852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 13109897 - 13109833
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||    
T  13109897 tcttagatgaagtggtaatccactgaaattaaactcacacacaactgtgaggttctaggttcgaa 13109833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 41808329 - 41808257
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||| ||||    
T  41808329 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtc 41808257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 2088908 - 2088973
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  2088908 ttagatgaagtggtaatccactgaaattgaactcacatacaattgtgaggttctgagttcgaaccc 2088973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 5055789 - 5055861
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  5055789 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 5055861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 28456001 - 28455929
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  28456001 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 28455929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 32007201 - 32007129
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  32007201 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 32007129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 41761412 - 41761484
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||| |||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||| ||||    
T  41761412 tcttggatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtc 41761484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 45813012 - 45813084
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  45813012 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 45813084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 29994384 - 29994451
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||   ||||||||||||    
T  29994384 tcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtctcgggttcgaaccc 29994451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 41039304 - 41039371
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  41039304 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 41039371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 778701 - 778635
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| |||| || ||||||||||    
T  778701 tcttagatgaattggtaattcactgaaattaaactcacacacaactgtcaggtcctaggttcgaacc 778635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 192542 - 192477
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||||||||||| | |||||| ||||||||||||||| |||||||| ||||||||||||    
T  192542 tcttagatgaagtggtaatccgctgaaaataaactcacacacaactgtgaggtcctgggttcgaac 192477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 4066088 - 4066036
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  4066088 tcttagatgaagtggtaattcactgaaattaaactcacatacaattgtaaggt 4066036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 26032928 - 26032856
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||| |||||| ||||||||||||||||||||| || ||||||||||  ||||||||||| ||||    
T  26032928 tcttagatgaagcggtaatccactgaaattaaactcacacaaaactgtgaggttccaggttcgaacccgggtc 26032856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 35110100 - 35110172
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| | || ||||||||||||||||||| ||| |||| |||||||||||||| ||||    
T  35110100 tcttagatgaagtggtaatcctctcaaattaaactcacacacaactgtaaggtcctgggttcgaacccgggtc 35110172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 48660149 - 48660077
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||| | | |||||||||||| ||||    
T  48660149 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtc 48660077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 13183179 - 13183238
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttc 236  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||    
T  13183179 ttagatgaagtggtaattcactgaaattaaactcacatacaactgtaaggttctaggttc 13183238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 49783834 - 49783767
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  ||||||||||||| ||||| |||| |||||||||| ||||||||||||    
T  49783834 tcttagatgaagtggtaaaccactgaaattaaattcacatacaactgtgaggttccgggttcgaaccc 49783767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 20875 - 20811
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||| |||||||| | |||||||||    
T  20875 tcttagatgaagtggtaatccactaaaaataaactcacacacaactgtgaggtcccgggttcgaa 20811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 5943808 - 5943736
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||| |||| || |||||||||||||||| |||| |||||||| ||| |||||||||| ||||    
T  5943808 tcttagatgaagtgataatccattgaaattaaactcacaaacaactgtgaggtcctgagttcgaacccgggtc 5943736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 39276477 - 39276405
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||| ||||||||||||| |||||||| |||||||||||| || |||||||| | |||||||||||| ||||    
T  39276477 tcttaaatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtc 39276405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 7275806 - 7275744
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||  ||||||||||||||||| |||||| ||||| |||| |||||||||    
T  7275806 ttagatgaagtggtaaaccactgaaattaaactcatacacaactgtgaagttccgggttcgaa 7275744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 26264537 - 26264590
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggtt 228  Q
    |||||||||||||| |||| || ||||||||||||||||||||| |||||||||    
T  26264537 tcttagatgaagtgataatacattgaaattaaactcacacacaactgtgaggtt 26264590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 7059594 - 7059542
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  7059594 tcttagataaagtggtaatccacttaaattaaactcacacacaactgtgaggt 7059542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 13097431 - 13097371
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggtt 235  Q
    ||||||||||||||||||| || | |||||||||||||| |||| ||||||||||| ||||    
T  13097431 tcttagatgaagtggtaatccaataaaattaaactcacatacaactgtgaggttctaggtt 13097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 21939069 - 21939005
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||  | |||||||||||||| ||||||| |||||||| |||| ||||||    
T  21939069 tcttagatgaagtggtaaaccgctgaaattaaactcgcacacaactgtgaggtcctggattcgaa 21939005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 3716729 - 3716682
Alignment:
Q  184 aagtggtaattcactgaaattaaactcacacacaattgtgaggttctg 231  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  3716729 aagtggtaatttactaaaattaaactcacacacaactgtgaggttctg 3716682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 4062978 - 4062936
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacaca 217  Q
    |||||||||||||| ||||||||| ||||||||||||||||||    
T  4062978 tcttagatgaagtgataattcactcaaattaaactcacacaca 4062936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 25931162 - 25931212
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttc 229  Q
    |||||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  25931162 agatgaagtggtaatctattgaaattaaactcacacacaattgtgaagttc 25931212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 50106200 - 50106269
Alignment:
Q  178 tagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||| ||| ||| |||||||| |||||||||||| || |||||||| | |||||||||||| ||||    
T  50106200 tagatgaaatggcaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtc 50106269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 9886893 - 9886933
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  9886893 tcttagatgaagtggtaattcagtgatattaaactcacaca 9886933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 11688390 - 11688347
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaa 218  Q
    |||| |||||||||||||| |||||||| |||||||||||||||    
T  11688390 tcttggatgaagtggtaatccactgaaaataaactcacacacaa 11688347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 39112050 - 39112005
Alignment:
Q  185 agtggtaattcactgaaattaaactcacacacaattgtgaggttctg 231  Q
    ||||||||| ||||||||| ||||||||||||||||||||| |||||    
T  39112050 agtggtaatccactgaaat-aaactcacacacaattgtgagattctg 39112005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 46447374 - 46447445
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaa----ttaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||| |||||||| ||||||||    ||||||||||||| || |||||||| | ||||||||||||    
T  46447374 tcttagatgatgtggtaatccactgaaaataattaaactcacacataactgtgaggtcccgggttcgaaccc 46447445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 29587344 - 29587307
Alignment:
Q  210 cacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||||||| | |||||||||||||||||    
T  29587344 cacacacaattgtgaggtcccgggttcgaacccaggtc 29587307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 32982351 - 32982400
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||||||||||| ||||  ||||||||| |||||||||||||| |||||    
T  32982351 tcttagatgaagtagtaaaccactgaaatcaaactcacacacaactgtga 32982400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 16770173 - 16770209
Alignment:
Q  191 aattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  16770173 aattcactgaaaataaactcacacacaactgtgaggt 16770209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 1174078 - 1174006
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||||||||    
T  1174078 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtc 1174006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 12735558 - 12735486
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||| ||||    
T  12735558 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtc 12735486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 238459 - 238531
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||| |||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||||||||    
T  238459 tcttcgatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtc 238531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 19673930 - 19674002
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||| ||||||||||||| |||||||||||||||| |||| ||||||||||| | |||||||||||||||||    
T  19673930 tcttaaatgaagtggtaatccactgaaattaaactcgcacataattgtgaggtcccgggttcgaacccaggtc 19674002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 26424859 - 26424931
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  26424859 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 26424931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 34739407 - 34739335
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  34739407 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 34739335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 43139907 - 43139979
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  43139907 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 43139979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 45874182 - 45874110
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  45874182 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 45874110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 31015109 - 31015042
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||  |||||||||    
T  31015109 tcttagatgaagtggtaaagcactgaaattaaactcacacacaactgtgaggttctgaattcgaaccc 31015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 52171991 - 52172058
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  52171991 tcttaaataaagtggtaatccactgaaattaaactcacacacaattgtgaggttctaggttcaaaccc 52172058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 28798389 - 28798461
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||| |||| | |||||||||||| ||||    
T  28798389 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccgggttcgaacccgggtc 28798461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 53457951 - 53457879
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | || ||||||||| ||||    
T  53457951 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccggattcgaacccgggtc 53457879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 54768433 - 54768505
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||| |||||||| |||||||||||||| ||||    
T  54768433 tcttagatgaagtggtaatccactgaaaaaaaactcgcacacaactgtgaggtcctgggttcgaacccgggtc 54768505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 19225386 - 19225319
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||| ||||||||| |||||||||||||| | ||||||||||||    
T  19225386 tcttagatgaagtggtaaaccactgaaactaaactcacgcacaattgtgaggtcccgggttcgaaccc 19225319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 55214781 - 55214707
Alignment:
Q  173 tatcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||| |||||||||| |||||||| |||||||| |||||| |||||||| | |||||||||||| ||||    
T  55214781 tatcttagataaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtc 55214707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 19814229 - 19814160
Alignment:
Q  178 tagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||| |  |||| |||||||||||    
T  19814229 tagatgaagtggtaatcaactgaaattaaactcacacataattgtgaggtcccaggtttgaacccaggtc 19814160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 1966677 - 1966625
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  1966677 tcttagatgaagttgtaatccactgaaattaaactcacacacaactgtgaggt 1966625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 23417484 - 23417556
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||| | || | |||||||||||| ||||    
T  23417484 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaagtcccgggttcgaacccgggtc 23417556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 29581045 - 29581116
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||   ||||||||||| |||||    
T  29581045 tcttagatgaagtggtaatccact-aaattaaactcacacacaactgtgaggtctcgggttcgaacctaggtc 29581116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 18257456 - 18257389
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||| |||||||| | ||| ||||||||    
T  18257456 tcttagatgaagtggtaatccactgaaaataaactcacgcacaactgtgaggtcccgggctcgaaccc 18257389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 19849504 - 19849571
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  || ||||| ||||||||||||||| |||||||| | ||||||||||||    
T  19849504 tcttagatgaagtggtaaaccattgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 19849571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 23532172 - 23532125
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  23532172 ttagaagaagtggtaattcactgaaattaaactcacacacaactgtga 23532125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 51287729 - 51287675
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaatt-aaactcacacacaattgtgaggtt 228  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  51287729 tcttagatgaaatggtaattcactgaaattaaaactcacacacaactgtgaggtt 51287675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 16555434 - 16555381
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggtt 228  Q
    |||||||||||||||||||||| | |||||||| |||||||||| |||||||||    
T  16555434 tcttagatgaagtggtaattcattaaaattaaattcacacacaactgtgaggtt 16555381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 23710337 - 23710398
Alignment:
Q  178 tagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    |||||||||||||||| ||||||||||||||||||||  || ||||||||||  ||||||||    
T  23710337 tagatgaagtggtaatccactgaaattaaactcacacgtaactgtgaggttccaggttcgaa 23710398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 39807963 - 39807906
Alignment:
Q  183 gaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| | | ||||||||    
T  39807963 gaagtggtaatccactgaaattaaactcacacacaactgtgaggtcccgagttcgaac 39807906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 2075632 - 2075564
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccca 243  Q
    |||||||| ||||| ||| ||| |||||||||||||||||| || |||||||| | |||||||||||||    
T  2075632 tcttagataaagtgataaatcattgaaattaaactcacacataactgtgaggtcccgggttcgaaccca 2075564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 22608108 - 22608040
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||| ||||| || |||||||||||||| |||||| |||||||| | |||||||||||| ||||    
T  22608108 agatgaagtagtaatccattgaaattaaactcagacacaactgtgaggtcccgggttcgaacccgggtc 22608040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 33770695 - 33770627
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccca 243  Q
    |||||||||||| |||||  |||||||||||||||||||||||| | ||| || | |||||||||||||    
T  33770695 tcttagatgaagcggtaaaccactgaaattaaactcacacacaactatgaagtcccgggttcgaaccca 33770627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 48822941 - 48822881
Alignment:
Q  174 atcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggt 234  Q
    |||||| |||||||||||||  | ||||||||||||||||||||| |||||| ||||||||    
T  48822941 atcttaaatgaagtggtaatctattgaaattaaactcacacacaactgtgagattctgggt 48822881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 55400355 - 55400291
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||| |||||||| |||||||||| |||| | |||||||| | |||||||    
T  55400355 tcttagatgaagtggtaatccactgaaaataaactcacatacaactatgaggttccgagttcgaa 55400291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 37620744 - 37620673
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggt 246  Q
    |||| |||||||||||||| ||||||||||||||||||||| |  |||||  | | ||||||||||||||||    
T  37620744 tctttgatgaagtggtaatccactgaaattaaactcacacaaacctgtgatatcccgggttcgaacccaggt 37620673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 516456 - 516518
Alignment:
Q  174 atcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttc 236  Q
    |||||||||||||  ||||| ||| |||| |||||||||||||||||||||| | ||||||||    
T  516456 atcttagatgaagctgtaatccaccgaaaataaactcacacacaattgtgagatcctgggttc 516518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 1126014 - 1125964
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    |||||||||||||||||||| | |||||||||||||| |||||| ||||||    
T  1126014 tcttagatgaagtggtaatttattgaaattaaactcatacacaactgtgag 1125964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 2864751 - 2864821
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||  |  ||||||||| ||||||||||| | ||||||||| ||||||||||| ||||    
T  2864751 ttagatgaagtggtaaacctttgaaattaagctcacacacaactctgaggttctaggttcgaacccgggtc 2864821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 12867968 - 12867918
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||| ||||||    
T  12867968 tcttagatgaagtggtaatccactgaaaataaactcactcacaactgtgag 12867918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 37134166 - 37134108
Alignment:
Q  184 aagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||  |||||||||||||||||||||||| ||||| |||  ||||||||||||    
T  37134166 aagtggtaaaccactgaaattaaactcacacacaactgtgaagtttcgggttcgaaccc 37134108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 50347330 - 50347372
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacaca 217  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  50347330 tcttagatgaggtggtaatccactgaaattaaactcacacaca 50347372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 12767214 - 12767145
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||||||||||  ||||  || ||||||||||||||||||||| |||||||||  || |||||||||||    
T  12767214 tcttagatgaagcagtaaaccagtgaaattaaactcacacacaactgtgaggtttcggattcgaacccag 12767145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 24517988 - 24518049
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    |||| ||||||||||||| | |||||||||||||||| ||||||||| ||  ||||||||||    
T  24517988 agattaagtggtaattcattaaaattaaactcacacataattgtgagatttcgggttcgaac 24518049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 50033509 - 50033460
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||| |||||||||||||||| |||||||||||| |||||||| |||||    
T  50033509 tcttatatgaagtggtaattcattgaaattaaacttacacacaactgtga 50033460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 41001535 - 41001575
Alignment:
Q  187 tggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  41001535 tggtaatgcactgaaattaaactcacacataattgtgaggt 41001575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 52768302 - 52768365
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||| ||||||| || ||||||||||||||||||||| |||||| | || ||||||||    
T  52768302 tcttagatgaa-tggtaatccattgaaattaaactcacacacaactgtgagatccttggttcgaa 52768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 11278105 - 11278067
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcaca 213  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  11278105 tcttagatgaagtggtaaaccactgaaattaaactcaca 11278067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 37395739 - 37395698
Alignment:
Q  187 tggtaattcactgaaattaaactcacacacaattgtgaggtt 228  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  37395739 tggtaagtcactgaaattatactcacacacaactgtgaggtt 37395698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 50036019 - 50035970
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||| ||||||| |||||||| |||||||||||| |||||||| |||||    
T  50036019 tcttatatgaagtagtaattcaatgaaattaaacttacacacaactgtga 50035970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 2804649 - 2804609
Alignment:
Q  173 tatcttagatgaagtggtaattcactgaaattaaactcaca 213  Q
    ||||||| ||||||||||||| |||| ||||||||||||||    
T  2804649 tatcttaaatgaagtggtaatccacttaaattaaactcaca 2804609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 41679492 - 41679452
Alignment:
Q  184 aagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  41679492 aagtggtaagtcactgaaattacactcacacacaactgtga 41679452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 8944 - 9011
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||||||||    
T  8944 tcttagatgaagtggtaaatcactgaaattaaactcacacacaactgtgaggtcctaggttcgaaccc 9011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 43753752 - 43753827
Alignment:
Q  173 tatcttagatgaagtggtaattcactgaaatt-aaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||| |||||||||||||||||    
T  43753752 tatcttagatgaagtggtaatccactgaaattaaaactcacatacaactgtgaggttccgggttcgaacccaggtc 43753827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 48444153 - 48444222
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||| || | ||||||||||||||    
T  48444153 tcttagatgaagtggtaattcactgaaattaaacttacacacaactgtgaagtacagggttcgaacccag 48444222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 4106865 - 4106793
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  4106865 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 4106793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 4107436 - 4107364
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  4107436 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 4107364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 25112248 - 25112320
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||| |||||||| | |||||||||||||||||    
T  25112248 tcttagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcccgggttcgaacccaggtc 25112320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 31770533 - 31770605
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  31770533 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 31770605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 47557908 - 47557836
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||  ||||||||||||||||||| |||| |||||||||| |||||||||||| ||||    
T  47557908 tcttagatgaagtggtaaaccactgaaattaaactcacatacaactgtgaggttccgggttcgaacccgggtc 47557836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 11355950 - 11355850
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag--------gtccgaccttgcaatttcggca 266  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||| | | ||||||||| ||||        ||||||||||||||||||||||    
T  11355950 tcttagatgaagtggtaatccactgaaattaaactcacacacaactgtgagatcccgggttcgaatccagatcataacgtccgaccttgcaatttcggca 11355851  T
Q  267 t 267  Q
    |    
T  11355850 t 11355850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 23358312 - 23358245
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  23358312 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 23358245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 44084065 - 44083995
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  44084065 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 44083995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 2146763 - 2146691
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||  ||||||||||||| ||||    
T  2146763 tcttagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcttgggttcgaacccgggtc 2146691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 8439205 - 8439141
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||| |||||||| |||| |||||||||| |||||||| |||||||||||    
T  8439205 tcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcctgggttcgaa 8439141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 25546276 - 25546348
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||| | || ||||||||| ||||    
T  25546276 tcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccggattcgaacccgggtc 25546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 38781209 - 38781273
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||    
T  38781209 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaa 38781273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 40058365 - 40058293
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| |||||||| |||||| |||||||| | |||||||||||| ||||    
T  40058365 tcttagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtc 40058293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 41183942 - 41183870
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||| |||| |||||||| |||||||||||| || ||||||||  ||||||||||||||||||    
T  41183942 tcttagatgaagtgataatccactgaaaataaactcacacataactgtgaggtattgggttcgaacccaggtc 41183870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 47570719 - 47570791
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||| | | |||||||||||| ||||    
T  47570719 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtc 47570791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 5587407 - 5587340
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||| |||||||||||||||  || |||||||| ||||||||||||||    
T  5587407 tcttagatgaagtggtaatccactaaaattaaactcacacgtaaatgtgaggtcctgggttcgaaccc 5587340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 5592368 - 5592301
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||| |||||||||||||||  || |||||||| ||||||||||||||    
T  5592368 tcttagatgaagtggtaatccactaaaattaaactcacacgtaaatgtgaggtcctgggttcgaaccc 5592301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 27229484 - 27229551
Alignment:
Q  181 atgaagtggtaattcactgaaattaaa-ctcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||||| | |||||||||||||||||    
T  27229484 atgaagtggtaatccactgaaattaaaactcacacacaactgtgaggtcccgggttcgaacccaggtc 27229551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 29484756 - 29484825
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||| |||||||| |||| ||||||||||||||||||| ||||||||||||| | |||||| |||||||    
T  29484756 tcttatatgaagtgataatccactgaaattaaactcacatacaattgtgaggtcccgggttcaaacccag 29484825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 5772820 - 5772892
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||| ||||||||||||  |||||||||||||||||||||||| |||||||||  | |||||||||| ||||    
T  5772820 tcttaaatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtttcgagttcgaacccgggtc 5772892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 28603138 - 28603066
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||| ||   |||||||||| ||||||    
T  28603138 tcttagatgaagtggtaatccactgagattaaactcacatacaattgtgaagtctcgggttcgaactcaggtc 28603066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 48146880 - 48146808
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| || ||||| | ||||||||||||| |||||||| | |||||||||||| ||||    
T  48146880 tcttagatgaagtggtaatccaatgaaaattaactcacacacaactgtgaggtcccgggttcgaacccgggtc 48146808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 27915581 - 27915631
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    |||||||||||||||||||||| |||||||||||||| |||||| ||||||    
T  27915581 tcttagatgaagtggtaattcattgaaattaaactcatacacaactgtgag 27915631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 7162791 - 7162861
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||  |||||||||||||||| | | |||||||||| ||||    
T  7162791 tcttagatgaagtggtaatccactgaaaataaact--cacacaattgtgaggtcccgagttcgaacccgggtc 7162861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 19630669 - 19630718
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  19630669 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtga 19630718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 31288225 - 31288294
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |||||| |||  | |||||||||||    
T  31288225 tcttagatgaagtggtaaaccactgaaattaaacttacacacaactgtgagattccagattcgaacccag 31288294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 35309981 - 35309909
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    |||||||||||||| |||  |||||||||||||||| |||||||||||||| | | || |||||| |||||||    
T  35309981 tcttagatgaagtgataaaccactgaaattaaactcgcacacaattgtgagatcccggattcgaaaccaggtc 35309909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 34763560 - 34763517
Alignment:
Q  184 aagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  34763560 aagtggtaatccactgaaattaaactcacacacaactgtgaggt 34763517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 47250252 - 47250295
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaa 218  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  47250252 tcttagatgaagtggtaatccactgaaaataaactcacacacaa 47250295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 15634882 - 15634944
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    |||||||||||||||||  ||||||| ||||||||||||||| ||||| |||| || ||||||    
T  15634882 ttagatgaagtggtaatctactgaaaataaactcacacacaactgtgaagttccggtttcgaa 15634944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 25872890 - 25872824
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    |||||||||||||||||| |||| |||| |||||||| |||||||||| ||||  | ||||||||||    
T  25872890 tcttagatgaagtggtaaatcacagaaaataaactcatacacaattgtaaggtcataggttcgaacc 25872824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 10220474 - 10220542
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||||||||| ||||||  ||||||||||||||||||||| || |||||||||  || |||||||||||    
T  10220474 tcttagatgaa-tggtaaaccactgaaattaaactcacacaaaactgtgaggtttcggattcgaacccag 10220542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 38033853 - 38033804
Alignment:
Q  178 tagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||| | |||||||| ||||||||||||||| ||||||||    
T  38033853 tagatgaagtggtactccactgaaaataaactcacacacaactgtgaggt 38033804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 39513988 - 39514049
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||||||| ||| ||||||||||||||||| || ||| |||| | ||||||||||    
T  39513988 agatgaagtggtaatccaccgaaattaaactcacacataactgtaaggtcccgggttcgaac 39514049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 42081620 - 42081660
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  42081620 tcttagataaagtggtaattcactgaaaataaactcacaca 42081660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 46427467 - 46427423
Alignment:
Q  195 cactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    |||||||||||||||||||||||| |||||||||| || ||||||    
T  46427467 cactgaaattaaactcacacacaactgtgaggttccggattcgaa 46427423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 23036208 - 23036268
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||| || ||||||||||||  |||| || |||||||||||| |||||||    
T  23036208 ttagatgaagtggtaatccattgaaattaaact--cacataactgtgaggttctgagttcgaa 23036268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 32606331 - 32606397
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||| ||||||||||||||||||||| ||||| | || ||| ||||   |||||||||||    
T  32606331 tcttagatgaattggtaattcactgaaattaaattcacataaaactgtaaggtctcgggttcgaacc 32606397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 35577877 - 35577926
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||||||||| | ||||| || |||||||||||| ||||||||||||||    
T  35577877 tcttagatgaaattgtaatccattgaaattaaacttacacacaattgtga 35577926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 4001845 - 4001885
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  4001845 tcttagatgaagtggtaaaccattgaaattaaactcacaca 4001885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 40657656 - 40657616
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacaca 215  Q
    |||||||||||||| |||| |||||||||||||||| ||||    
T  40657656 tcttagatgaagtgataatccactgaaattaaactcgcaca 40657616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 43203433 - 43203361
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||| ||||||||  ||| ||||| || ||||||||||||||| ||| |||| | |||||||||||| ||||    
T  43203433 tcttatatgaagtgaaaatccactgtaaataaactcacacacaactgtaaggtcccgggttcgaacccgggtc 43203361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 863 - 935
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  863 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 56608 - 56536
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  56608 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 56536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 3822523 - 3822451
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  3822523 tcttagaagaagtggtaattcactaaaattaaactcacacacaactgtgagatcctgggttcgaacccgggtc 3822451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 6602519 - 6602591
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  6602519 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 6602591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 6677972 - 6678044
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  6677972 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 6678044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 32333241 - 32333169
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  32333241 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 32333169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 35779498 - 35779570
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  35779498 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 35779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 1341 - 1407
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||    
T  1341 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacc 1407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 1078649 - 1078715
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||    
T  1078649 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacc 1078715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 7813447 - 7813382
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  7813447 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 7813382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 70524 - 70596
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||| ||||| ||||    
T  70524 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcaaacccgggtc 70596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 4530983 - 4531055
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||  |||||||||||||||||||||||  |||||||| | |||||||||||| ||||    
T  4530983 tcttagatgaagtggtaaaccactgaaattaaactcacacacagctgtgaggtcccgggttcgaacccgggtc 4531055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 5385459 - 5385399
Alignment:
Q  181 atgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||    
T  5385459 atgaagtggtaaatcactgaaattaaactcacacacaactgtgaggtcccgggttcgaacc 5385399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 28817383 - 28817311
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||| | | |||||||||||| ||||    
T  28817383 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtc 28817311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 41849232 - 41849332
Alignment:
Q  174 atcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag--------gtccgaccttgcaatttcggc 265  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||| || |||||||||||        |||||||||||||||||||||    
T  41849232 atcttagatgaaatggtaat-cactgaaattaaactcacacacaacagtgaggttccggattcgaacccagatcacgacgtccgaccttgcaatttcggc 41849330  T
Q  266 at 267  Q
    ||    
T  41849331 at 41849332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 42885301 - 42885229
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||| | | |||||||||||| ||||    
T  42885301 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtc 42885229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 13891217 - 13891150
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| |||||||| || |||||||||||    
T  13891217 tcttagatgaagtggtaaaccactgaaaataaactcacacacaactgtgaggtcctaggttcgaaccc 13891150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 45264641 - 45264708
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||| ||||||||||| ||||||||||||||||||||| || |||||||| | ||||||||||||    
T  45264641 tcttagaggaagtggtaatccactgaaattaaactcacacaaaactgtgaggtcccgggttcgaaccc 45264708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 29425478 - 29425432
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattg 221  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  29425478 tcttagatgaagtggtaatccactgaaattaaactcacacacaattg 29425432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 31532128 - 31532178
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  31532128 ttagatgaagtggtaatccactgaaattaaactcacacacaactgtgaggt 31532178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 9775043 - 9775112
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||||||||||| ||||| || | |||||||||||||||| || |||||||||| ||||||||||||||    
T  9775043 tcttagatgaagttgtaatccattcaaattaaactcacacataactgtgaggttccgggttcgaacccag 9775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 40911348 - 40911295
Alignment:
Q  174 atcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  40911348 atcttagatgaagtggtaagccactgaaattaaactcacacacagttgtgaggt 40911295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 42192640 - 42192705
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||| | | ||||||||||    
T  42192640 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaac 42192705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 31695270 - 31695322
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  31695270 tcttagatgaagtggtaaaccattgaaattaaactcacacacaattgtgaggt 31695322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 7792788 - 7792721
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||| |||||| | | ||||||||||||    
T  7792788 tcttagatgaagtagtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaaccc 7792721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 9292145 - 9292096
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  9292145 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtga 9292096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 39303437 - 39303384
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaatt-aaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  39303437 tcttagatgaagtggtaatccactgaaattaaaactcacacacaactgtgaggt 39303384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 39435409 - 39435340
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccag 244  Q
    ||||||||||||| ||||| |||  ||||||||||||||||||| ||||||||   ||||||||||||||    
T  39435409 tcttagatgaagtcgtaatccacataaattaaactcacacacaactgtgaggtctcgggttcgaacccag 39435340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 18752468 - 18752401
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||| ||||||||  ||| |||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  18752468 tcttanatgaagtgtcaatccactgaaattaaacccacacacaactgtaaggttccgggttcgaaccc 18752401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 10963243 - 10963307
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||||||||||| |||||||| ||||||  ||||||| |||||||| | |||||||||||    
T  10963243 tcttagatgaagtggtaatccactgaaaataaact--cacacaactgtgaggtcccgggttcgaacc 10963307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 31969721 - 31969788
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| | |||||| | | ||||||||||    
T  31969721 tcttagatgaagtggtaaaccactgaaattaaattcacacacaactttgaggtcccgtgttcgaaccc 31969788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 6099699 - 6099634
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaac 240  Q
    ||||||||||||||||||  |||| ||| ||||||||| | |||||||||||||  ||||||||||    
T  6099699 tcttagatgaagtggtaaaccactaaaactaaactcacgcgcaattgtgaggtttcgggttcgaac 6099634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 14400842 - 14400781
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttc 236  Q
    ||||||||||||||||||  ||||  |||||||||||| |||||||||||||| | ||||||    
T  14400842 tcttagatgaagtggtaaaccacttgaattaaactcactcacaattgtgaggtcccgggttc 14400781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 7403694 - 7403744
Alignment:
Q  173 tatcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||| |||||    
T  7403694 tatcttagatgaagtggtaa-tcactgaaattaagctcacaaacaactgtga 7403744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 20269657 - 20269607
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    ||||||||||| ||||||| || ||||| ||||||||||||||| ||||||    
T  20269657 tcttagatgaaatggtaatccattgaaaataaactcacacacaactgtgag 20269607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 21056286 - 21056236
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    ||||||||||| ||||||| || ||||| ||||||||||||||| ||||||    
T  21056286 tcttagatgaaatggtaatccattgaaaataaactcacacacaactgtgag 21056236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 42364703 - 42364752
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    |||||||| |||||||||   ||||||||||||||||||||||| |||||    
T  42364703 tcttagataaagtggtaaactactgaaattaaactcacacacaactgtga 42364752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 44124153 - 44124104
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtga 224  Q
    ||||| ||||||| |||||||| |||||||||||| |||||||| |||||    
T  44124153 tcttatatgaagtagtaattcaatgaaattaaacttacacacaactgtga 44124104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 12534721 - 12534786
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||||||||||||  ||||||| ||||||  ||| ||| |||||| | ||||||||||||||    
T  12534721 tcttagatgaagtggtaatctactgaaaataaact--cacgcaactgtgagatcctgggttcgaaccc 12534786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 33731465 - 33731517
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||| ||||||||||  |||| ||||||||||||||||||| || |||||    
T  33731465 tcttagaagaagtggtaaaccactaaaattaaactcacacacaactgggaggt 33731517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 40932834 - 40932786
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    |||||||||||||||||  ||| |||||||| |||||||||| ||||||    
T  40932834 ttagatgaagtggtaatctactaaaattaaagtcacacacaactgtgag 40932786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 21000815 - 21000747
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  21000815 agatgaagtggtaaaccactgaaattaaacccacacacaattgtgaggtcccgggttcgaacccaggtc 21000747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 33621621 - 33621549
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||| | |||||||||||| ||||    
T  33621621 tcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccgggttcgaacccgggtc 33621549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 28323059 - 28322992
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||| | ||||||||||||    
T  28323059 tcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaaccc 28322992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 19145597 - 19145536
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttc 236  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||    
T  19145597 tcttagatgaagtggtaatccactgaaattaaattcacacacaattgtgaggtcccgggttc 19145536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 21037417 - 21037365
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  21037417 tcttagatgaagtggtaattcactgaaaataaactcacacacaactgtgaggt 21037365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 33704343 - 33704271
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  33704343 tcttaaatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtc 33704271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 361138 - 361071
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||||||| |||| ||||||||||||||||||| | || |||||||||| ||||||||||||    
T  361138 tcttagatgaagtgttaatccactgaaattaaactcacatataactgtgaggttccgggttcgaaccc 361071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 4464254 - 4464187
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||| |  |||||||||||    
T  4464254 tcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccaggttcgaaccc 4464187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 24619080 - 24619132
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  24619080 tcttagatgaagtggtaatcgactgaaattaaactcacacacaattatgaggt 24619132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 29009651 - 29009703
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  29009651 tcttagatgaagtggtaattcactaaaaataaactcacacacaactgtgaggt 29009703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 35218641 - 35218693
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  35218641 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggt 35218693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 7014313 - 7014375
Alignment:
Q  177 ttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||||||||||||| ||||||||||||||||||| | |||| |||||||  |||||||||    
T  7014313 ttagatgaagtggtaatacactgaaattaaactcacataaaattatgaggtttcgggttcgaa 7014375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 16518548 - 16518478
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||| ||||||| |||||||| ||||||||  ||||| |||||| | |||||||||||||||||||    
T  16518548 tcttagatgaaatggtaatccactgaaaataaactca--cacaactgtgagctcctgggttcgaacccaggtc 16518478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 22576308 - 22576244
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaa 239  Q
    ||||||| ||||||||||| || |||||| ||||||||||| || |||||||||| |||||||||    
T  22576308 tcttagaagaagtggtaatacaatgaaatcaaactcacacataactgtgaggttccgggttcgaa 22576244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 2959272 - 2959210
Alignment:
Q  179 agatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    ||||||||||||| | ||| |||||||||||||||||||| ||||||||   |||||||||||    
T  2959272 agatgaagtggtattccacggaaattaaactcacacacaactgtgaggtctcgggttcgaacc 2959210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 32289472 - 32289420
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||| ||||||||||||||||||||| | |||||| |||||||| ||||||||    
T  32289472 tctttgatgaagtggtaattcactgataataaacttacacacaactgtgaggt 32289420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 10999416 - 10999459
Alignment:
Q  182 tgaagtggtaattcactgaaattaaactcacacacaattgtgag 225  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||    
T  10999416 tgaagtggtaatccactgaaattaaactcacatacaactgtgag 10999459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 7487269 - 7487331
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacc 241  Q
    |||| ||| |||||||||  |||||||||||||||||||    |||||||||||||||||| |||||    
T  7487269 tcttggataaagtggtaagccactgaaattaaactcaca----attgtgaggttctgggtttgaacc 7487331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 11456100 - 11456048
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||||||||||||||  |||  || ||||||||||||||||| ||||||    
T  11456100 tcttagatgaagtggtaatcgactagaaataaactcacacacaattatgaggt 11456048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 28592129 - 28592181
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggt 227  Q
    |||||||| || ||||||| || ||||| ||||||||||||||| ||||||||    
T  28592129 tcttagataaattggtaatccattgaaaataaactcacacacaactgtgaggt 28592181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 13952 - 14019
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  13952 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 14019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 19632 - 19699
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | ||||||||||||    
T  19632 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccc 19699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 114379 - 114312
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||| | ||||||||||||    
T  114379 tcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaaccc 114312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 22290 - 22218
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtc 247  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| |||||||| | ||| |||||||| ||||    
T  22290 tcttagatgaagtggtaatccactgaaattaaactcacacgcaactgtgaggtcccgggctcgaacccgggtc 22218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 9974 - 10041
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaattaaactcacacacaattgtgaggttctgggttcgaaccc 242  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| | |||||| | ||||||||||||    
T  9974 tcttagatgaagtggtaatccactgaaaataaactcacacacaactatgaggtcccgggttcgaaccc 10041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 14784 - 14727
Alignment:
Q  187 tggtaattcactgaaattaaactca--cacacaattgtgaggttctgggttcgaaccc 242  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  14784 tggtaattcactgaaattaaactcagacacacaattgtgaggttccgggttcgaaccc 14727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 14633 - 14590
Alignment:
Q  174 atcttagatgaagtggtaattcactgaaattaaactcacacaca 217  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  14633 atcttagattaagtggtaatccactgaaattaaactcacacaca 14590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 34946 - 34877
Alignment:
Q  175 tcttagatgaagtggtaattcactgaaatt-aaactcacacacaattgtgaggttctgggttcgaaccca 243  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||| || ||||| |||| ||||||||||    
T  34946 tcttagatgaagtggtaatccactgaaattaaaactcacatacaactgcgaggtcctggattcgaaccca 34877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 389 times since January 2019
Visitors: 2761