View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0335_low_11 (Length: 212)

Name: NF0335_low_11
Description: NF0335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0335_low_11
NF0335_low_11
[»] chr7 (6 HSPs)
chr7 (1-131)||(46993334-46993464)
chr7 (1-121)||(39695168-39695288)
chr7 (2-131)||(7352340-7352468)
chr7 (8-132)||(7995038-7995162)
chr7 (22-103)||(11727326-11727407)
chr7 (18-128)||(46265276-46265386)
[»] chr1 (7 HSPs)
chr1 (1-123)||(25785837-25785959)
chr1 (22-131)||(1161403-1161512)
chr1 (1-131)||(16584834-16584964)
chr1 (2-123)||(8084074-8084195)
chr1 (1-131)||(18461195-18461325)
chr1 (23-131)||(11620026-11620134)
chr1 (1-75)||(42009995-42010069)
[»] scaffold0879 (1 HSPs)
scaffold0879 (1-131)||(550-680)
[»] chr4 (4 HSPs)
chr4 (1-131)||(4413540-4413670)
chr4 (1-131)||(24466285-24466415)
chr4 (2-131)||(23107877-23108010)
chr4 (1-131)||(28319260-28319390)
[»] chr3 (2 HSPs)
chr3 (1-131)||(46655601-46655731)
chr3 (22-131)||(11503296-11503405)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-130)||(1815-1944)
[»] chr8 (7 HSPs)
chr8 (3-131)||(44223297-44223425)
chr8 (1-131)||(17722390-17722520)
chr8 (2-131)||(7956310-7956439)
chr8 (1-131)||(35948913-35949043)
chr8 (22-90)||(9040519-9040587)
chr8 (28-75)||(34760832-34760879)
chr8 (22-111)||(3767646-3767735)
[»] chr5 (4 HSPs)
chr5 (1-131)||(16746391-16746521)
chr5 (3-131)||(19947796-19947924)
chr5 (1-91)||(16746550-16746640)
chr5 (1-87)||(31895982-31896068)
[»] chr2 (5 HSPs)
chr2 (1-111)||(4638240-4638350)
chr2 (34-131)||(36009278-36009375)
chr2 (1-132)||(13852238-13852369)
chr2 (1-131)||(31111499-31111629)
chr2 (22-111)||(38607073-38607162)
[»] scaffold0070 (1 HSPs)
scaffold0070 (8-130)||(13839-13961)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 46993334 - 46993464
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  46993334 cggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaaccaatccgatga 46993433  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||| ||||||||||| |||||||    
T  46993434 taaccacactccttattttactaatattatc 46993464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 39695168 - 39695288
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||    
T  39695168 cggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatga 39695267  T
Q  101 taaccacactctttattttac 121  Q
    ||||| ||||| |||||||||    
T  39695268 taacctcactccttattttac 39695288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 7352468 - 7352340
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 101  Q
    ||||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  7352468 ggtttgaaaccgatccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T
Q  102 aaccacactctttattttactagtattatc 131  Q
    |||||||||| ||||||||||| |||||||    
T  7352369 aaccacactccttattttactaatattatc 7352340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 7995038 - 7995162
Alignment:
Q  8 aaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccac 107  Q
    ||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||    
T  7995038 aaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaaccgatgaaccaatccgataataaccac 7995137  T
Q  108 actctttattttactagtattatct 132  Q
    |||| ||||||||||| ||||||||    
T  7995138 actccttattttactaatattatct 7995162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 11727407 - 11727326
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataa 103  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  11727407 caatcaaaaccgatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 46265386 - 46265276
Alignment:
Q  18 gaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttatt 117  Q
    ||||||||| |||| ||||| |||||||||||||    |||| |||||| |||||||  ||||||||||||||||  ||||| ||||  ||||| | |||    
T  46265386 gaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcattttgagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcatt 46265287  T
Q  118 ttactagtatt 128  Q
    |||||| ||||    
T  46265286 ttactattatt 46265276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 25785837 - 25785959
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25785837 cggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatga 25785936  T
Q  101 taaccacactctttattttacta 123  Q
    |||||||| ||||||||||||||    
T  25785937 taaccacattctttattttacta 25785959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 1161512 - 1161403
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 121  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1161512 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttac 1161413  T
Q  122 tagtattatc 131  Q
    || |||||||    
T  1161412 taatattatc 1161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 16584964 - 16584834
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||    
T  16584964 cggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatga 16584865  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    |||||| |||| ||||||||||| |||||||    
T  16584864 taaccaaactccttattttactaatattatc 16584834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 8084074 - 8084195
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 101  Q
    ||||||||| | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  8084074 ggtttgaaaccaatccgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgat 8084173  T
Q  102 aaccacactctttattttacta 123  Q
    |||||||||| |||||||||||    
T  8084174 aaccacactccttattttacta 8084195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 18461195 - 18461325
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||| ||||||||||| | ||||| |||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  18461195 cggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatga 18461294  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||| ||| |||| || |||||||    
T  18461295 taaccacactcattaatttattaatattatc 18461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 11620026 - 11620134
Alignment:
Q  23 aatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttact 122  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||  ||||||  ||||||||||    
T  11620026 aatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatgaaccaatccgatgatactcacactacttattttact 11620125  T
Q  123 agtattatc 131  Q
    | |||||||    
T  11620126 aatattatc 11620134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42010069 - 42009995
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 75  Q
    |||||||||| |||||  || |||| ||||| |||||||||| |||||  |||||||||||||||| ||||||||    
T  42010069 cggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 680 - 550
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  680 cggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatga 581  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||| ||||||||||| |||||||    
T  580 taaccacactccttattttactaatattatc 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4413540 - 4413670
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||| ||| ||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4413540 cggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatga 4413639  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||| ||||||| |||||||||||||||||||    
T  4413640 taatcacactccttattttactagtattatc 4413670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 24466415 - 24466285
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  24466415 cggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatga 24466316  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||| ||||||||||| |||||||    
T  24466315 taaccacactccttattttactaatattatc 24466285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 23108010 - 23107877
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc----aatccaa 97  Q
    ||||||||| ||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||| |    
T  23108010 ggtttgaaaccgatccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccga 23107911  T
Q  98 tgataaccacactctttattttactagtattatc 131  Q
    ||||||||| |||| ||||||||||| |||||||    
T  23107910 tgataaccatactccttattttactaatattatc 23107877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 28319390 - 28319260
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| || || ||| ||||| |||  ||| || ||||||||||||||||||||||||||||||||| |||||| | |||||| |||||  ||||    
T  28319390 cggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatga 28319291  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||| ||||||||||| |||||||    
T  28319290 taaccacactccttattttactaatattatc 28319260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 46655601 - 46655731
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| ||| ||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46655601 cggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 46655700  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||  ||||||||||| |||||||    
T  46655701 taaccacacttcttattttactaatattatc 46655731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 11503405 - 11503296
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 121  Q
    |||||||||| |||||  |||||||||||||  | |||||||||| |||||||  ||||||||| |||| | || ||| ||||| |||||   |||||||    
T  11503405 caatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactccccattttac 11503306  T
Q  122 tagtattatc 131  Q
    || |||||||    
T  11503305 tattattatc 11503296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 1944 - 1815
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  1944 cggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaaccaatccgatga 1845  T
Q  101 taaccacactctttattttactagtattat 130  Q
    |||| |||||| ||||||||||| ||||||    
T  1844 taacaacactccttattttactaatattat 1815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 44223425 - 44223297
Alignment:
Q  3 gtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgata 102  Q
    |||| ||| ||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  44223425 gtttaaaaccgatctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgata 44223326  T
Q  103 accacactctttattttactagtattatc 131  Q
    ||||||||| ||||||||| | |||||||    
T  44223325 accacactccttattttacaaatattatc 44223297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 17722520 - 17722390
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| | ||| |||  ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  17722520 cggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatga 17722421  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||| ||| ||||||| |||||||    
T  17722420 taaccacactcattactttactaatattatc 17722390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 7956439 - 7956310
Alignment:
Q  2 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 101  Q
    ||||||||| ||||  ||| |||||||||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||    
T  7956439 ggtttgaaaccgattcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgat 7956340  T
Q  102 aaccacactctttattttactagtattatc 131  Q
    ||||| |||| ||||||||||| |||||||    
T  7956339 aaccatactccttattttactaatattatc 7956310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 35948913 - 35949043
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| ||||| |||||| || |||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  35948913 cggtttgaaaccgatccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatga 35949012  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    |||| ||| || ||||||||||| |||||||    
T  35949013 taacaacattccttattttactaatattatc 35949043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 9040519 - 9040587
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 90  Q
    ||||| |||| ||||| ||||||||||||||  |||||||||||| ||||||   ||||||||||||||    
T  9040519 caatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 34760879 - 34760832
Alignment:
Q  28 aaactgatctagtttggtttggttcatggtttttcatttcgagatccg 75  Q
    |||| |||||||||||||||||||| |||||||| |||| ||||||||    
T  34760879 aaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 3767735 - 3767646
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 111  Q
    ||||| |||| ||||||||||||||||||||  ||||||| |||| |||||||    |||||||||||| | || ||| ||||| |||||    
T  3767735 caatctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactc 3767646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 16746521 - 16746391
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  16746521 cggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaaccaatccgatga 16746422  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||| ||||| ||||||||||| |||||||    
T  16746421 taacctcactccttattttactaatattatc 16746391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 19947796 - 19947924
Alignment:
Q  3 gtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgata 102  Q
    |||||||| |||||  || |||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  19947796 gtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgata 19947895  T
Q  103 accacactctttattttactagtattatc 131  Q
    ||||||||| ||||||||||| |||||||    
T  19947896 accacactccttattttactaatattatc 19947924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 16746640 - 16746550
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacca 91  Q
    |||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  16746640 cggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31895982 - 31896068
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatga 87  Q
    |||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  31895982 cggtttgaaaccgatctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4638240 - 4638350
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||||||||| ||| ||||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  4638240 cggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatga 4638339  T
Q  101 taaccacactc 111  Q
    |||||||||||    
T  4638340 taaccacactc 4638350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 36009278 - 36009375
Alignment:
Q  34 atctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtattatc 131  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatc 36009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13852369 - 13852238
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    |||||||||| |||||  || ||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||   |||    
T  13852369 cggtttgaaaccgatccaaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttga 13852270  T
Q  101 taaccacactctttattttactagtattatct 132  Q
    ||||||||||| |||||||| || ||||||||    
T  13852269 taaccacactccttattttattaatattatct 13852238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 31111499 - 31111629
Alignment:
Q  1 cggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatga 100  Q
    ||||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||   |||    
T  31111499 cggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatctggtga 31111598  T
Q  101 taaccacactctttattttactagtattatc 131  Q
    ||||||||||  ||||||||||| |||||||    
T  31111599 taaccacacttcttattttactaatattatc 31111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 38607073 - 38607162
Alignment:
Q  22 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 111  Q
    ||||| ||||||| || |||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||   ||| |||||||||||    
T  38607073 caatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactc 38607162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 13839 - 13961
Alignment:
Q  8 aaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccac 107  Q
    ||||||| | ||| ||||| ||||||||||  ||||||||||||   |||||||||||| |||||||   ||||||||||| | | || ||| ||||| |    
T  13839 aaatcgaaccgaaccaatctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaaccgatgctaacctc 13938  T
Q  108 actctttattttactagtattat 130  Q
    ||||   ||||||||| ||||||    
T  13939 actccccattttactattattat 13961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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