View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0335_low_5 (Length: 331)
Name: NF0335_low_5
Description: NF0335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0335_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 8552367 - 8552561
Alignment:
| Q |
1 |
aggaagaggaagagaggaaaacaaaggcgcttgagaaagctttgttggaagctgcgttgagtaaacc---ggaggaggaggaagaagaagatgaagatgt |
97 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
8552367 |
aggaagaggaggagaggaaaacaaaggcgcttgagaaggctttgttggaagctgcgttgagtaaacccgaggaggaggaggaggaagaagatgaagatgt |
8552466 |
T |
|
| Q |
98 |
cggtgttgtggaagaggaagatcagaagtctttgtctgttgggattattggtgctcctaatgctggcaaatcttctctcactaattatatggtga |
192 |
Q |
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|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
8552467 |
cggtgttgtgaatgaggaggatcagaagtctttgtctgttgggattattggtgctcctaatgctggaaaatcttctctcactaactacatggtga |
8552561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7808964 - 7808770
Alignment:
| Q |
1 |
aggaagaggaagagaggaaaacaaaggcgcttgagaaagctttgttggaagctgcgttgagtaaacc---ggaggaggaggaagaagaagatgaagatgt |
97 |
Q |
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|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
7808964 |
aggaagaggaggagaggaaaacaaaggcgcttgagaaggctttgttggaagctgcgttgagtaaacccgaggaggaggaggaggaagaagatgaagatgt |
7808865 |
T |
|
| Q |
98 |
cggtgttgtggaagaggaagatcagaagtctttgtctgttgggattattggtgctcctaatgctggcaaatcttctctcactaattatatggtga |
192 |
Q |
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|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
7808864 |
cggtgttgtgaatgaggaggatcagaagtctttgtctgttgggattattggtgctcctaatgctggaaaatcttctctcactaactacatggtga |
7808770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 11941946 - 11941908
Alignment:
| Q |
202 |
gtttgtttctttcatttcaataatgatgttatgttatgt |
240 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
11941946 |
gtttgtttctttcatttcagtaatgatgttatgttatgt |
11941908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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