View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0336_low_2 (Length: 307)
Name: NF0336_low_2
Description: NF0336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0336_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 124 - 288
Target Start/End: Original strand, 47340273 - 47340435
Alignment:
| Q |
124 |
tcgtcattagtgtattaacaccttggttatcatcagattcagtgttatgttggtcaatttacatgatcgctgtgacgagtattggagctattctaataga |
223 |
Q |
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| T |
47340273 |
tcgtcattagtgtattaacacct-ggttatcatcagattcagtgttatgttggtcaatttacatgatcgctgtgacgagtattggagctattctaataga |
47340371 |
T |
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| Q |
224 |
tactccaaaaccgattagaatatgtttaattttattctatttattttcaataaagtcataacatt |
288 |
Q |
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| T |
47340372 |
tactccaaaactgattagaatatgtttaattttattcta-ttattttcaataaagtcataacatt |
47340435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 47340246 - 47340274
Alignment:
| Q |
30 |
atctctggactagatatcgtaatcttgtc |
58 |
Q |
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| T |
47340246 |
atctctggactagatatcgtaatcttgtc |
47340274 |
T |
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