View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0337_high_10 (Length: 253)

Name: NF0337_high_10
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0337_high_10
NF0337_high_10
[»] chr3 (10 HSPs)
chr3 (27-119)||(11029154-11029247)
chr3 (109-197)||(48058927-48059015)
chr3 (108-185)||(47393884-47393961)
chr3 (108-169)||(48058266-48058327)
chr3 (108-167)||(36244148-36244207)
chr3 (108-162)||(31595126-31595180)
chr3 (108-162)||(31595863-31595917)
chr3 (140-178)||(55058538-55058576)
chr3 (108-168)||(29749332-29749392)
chr3 (139-183)||(11617438-11617482)
[»] chr1 (11 HSPs)
chr1 (108-197)||(2071440-2071529)
chr1 (108-178)||(19790831-19790901)
chr1 (108-185)||(36391335-36391412)
chr1 (198-242)||(2071377-2071421)
chr1 (108-159)||(39869997-39870048)
chr1 (108-162)||(39869323-39869377)
chr1 (108-169)||(50546054-50546115)
chr1 (139-182)||(12644860-12644903)
chr1 (108-178)||(2070778-2070848)
chr1 (108-168)||(14237380-14237440)
chr1 (119-183)||(15601450-15601514)
[»] chr6 (3 HSPs)
chr6 (108-182)||(20508602-20508676)
chr6 (108-161)||(32261204-32261257)
chr6 (139-191)||(18094440-18094492)
[»] chr5 (9 HSPs)
chr5 (108-182)||(14098487-14098561)
chr5 (145-197)||(33574156-33574208)
chr5 (119-194)||(42654131-42654206)
chr5 (108-182)||(33574009-33574083)
chr5 (108-162)||(10470051-10470105)
chr5 (198-242)||(42654228-42654272)
chr5 (108-175)||(12696474-12696541)
chr5 (108-182)||(18861882-18861955)
chr5 (155-191)||(39933469-39933505)
[»] chr4 (7 HSPs)
chr4 (108-182)||(19638094-19638168)
chr4 (108-153)||(20422937-20422982)
chr4 (110-185)||(39832006-39832081)
chr4 (108-163)||(43428467-43428522)
chr4 (144-197)||(49574100-49574152)
chr4 (130-183)||(49574726-49574779)
chr4 (108-160)||(21436549-21436601)
[»] chr8 (8 HSPs)
chr8 (108-168)||(9044177-9044237)
chr8 (108-185)||(16723674-16723751)
chr8 (125-185)||(43307424-43307484)
chr8 (130-185)||(36697695-36697750)
chr8 (138-183)||(24286736-24286781)
chr8 (108-168)||(24287611-24287671)
chr8 (155-191)||(25230401-25230437)
chr8 (108-191)||(36228496-36228579)
[»] chr7 (8 HSPs)
chr7 (140-191)||(43448493-43448544)
chr7 (108-164)||(19069252-19069308)
chr7 (108-162)||(45432966-45433020)
chr7 (130-163)||(14253962-14253995)
chr7 (130-163)||(14255615-14255648)
chr7 (153-197)||(15894599-15894643)
chr7 (108-164)||(19068456-19068512)
chr7 (127-182)||(31076921-31076977)
[»] chr2 (4 HSPs)
chr2 (108-182)||(30784867-30784940)
chr2 (108-160)||(25616841-25616893)
chr2 (139-191)||(38798449-38798501)
chr2 (108-162)||(45631218-45631272)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 11029247 - 11029154
Alignment:
Q  27 tatcacaaacaagacgatactagaatgattgtcctatgtttcttcaactctttctattgtactatgtttcttcaattg-aactatatatatatg 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  11029247 tatcacaaacaagacggtactagaatgattgtcctatgtttcttcaactctttctactgtactatgtttcttcaattgcaactatatatatatg 11029154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 48059015 - 48058927
Alignment:
Q  109 atatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaatctttaccatga 197  Q
    ||||||||| | ||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  48059015 atatatataggacatatcaagtaagaggaattttaaaatgagagggtgagaggattaaatcataacccttggatcaatttttaccatga 48058927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 47393884 - 47393961
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaa 185  Q
    |||||||||||| ||| | || ||||| || ||| |||||||||||||||||||||||||||| |||| |||||||||    
T  47393884 tatatatatatgacatttcaaatgagaggactttataaatgagagggtgagaggattaaatcacaaccgttagatcaa 47393961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 48058266 - 48058327
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatc 169  Q
    |||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||||||    
T  48058266 tatatatatagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 48058327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 36244207 - 36244148
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaa 167  Q
    |||||||||| ||||| | || |||||||| |||||||||||||||||||||||||||||    
T  36244207 tatatatatagggcatttcaaatgagatgattttttaaatgagagggtgagaggattaaa 36244148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 31595126 - 31595180
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagagga 162  Q
    |||||||| | ||||||| |||||||| || ||||||||||||||||||||||||    
T  31595126 tatatatagagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 31595180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 31595917 - 31595863
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagagga 162  Q
    |||||||| | ||||||| |||||||| || ||||||||||||||||||||||||    
T  31595917 tatatatagagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 31595863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 55058538 - 55058576
Alignment:
Q  140 ttttaaatgagagggtgagaggattaaatcataaccctt 178  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  55058538 ttttaaatgagagggtgagaggattaaatcacaaccctt 55058576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 29749392 - 29749332
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaat 168  Q
    ||||||||||| |||| | || ||||| || |||||||||||||||||||||||| |||||    
T  29749392 tatatatatatagcatttcaaatgagaggactttttaaatgagagggtgagaggagtaaat 29749332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 11617438 - 11617482
Alignment:
Q  139 tttttaaatgagagggtgagaggattaaatcataacccttagatc 183  Q
    |||||||||||||||||||||||| ||||| | |||| |||||||    
T  11617438 tttttaaatgagagggtgagaggagtaaataacaaccattagatc 11617482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 2071529 - 2071440
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaatctttaccatga 197  Q
    |||||||||| ||||||| |||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2071529 tatatatatagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcataacctttagatcaatctttaccatga 2071440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 19790831 - 19790901
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataaccctt 178  Q
    |||||||||| ||||||| |||||||| || |||| |||||||||||||||||| || ||| |||||||||    
T  19790831 tatatatatagggcatatcaagtgagaggagttttaaaatgagagggtgagagggtttaattataaccctt 19790901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 36391412 - 36391335
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaa 185  Q
    ||||||||||||  || | || ||||| || ||| |||||||||||||||||||||||||||| |||| |||||||||    
T  36391412 tatatatatatgatatttcaaatgagaggactttataaatgagagggtgagaggattaaatcacaaccgttagatcaa 36391335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 2071421 - 2071377
Alignment:
Q  198 acatcagaattttagcacttccttcctactacgtgttttgtctct 242  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||    
T  2071421 acatcagaattttagcacttccttcctcctacgcgttttgtctct 2071377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 39870048 - 39869997
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgaga 159  Q
    |||||||||||| ||||| |||||||| || |||||||||||||||||||||    
T  39870048 tatatatatatgacatatcaagtgagaggagtttttaaatgagagggtgaga 39869997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 39869323 - 39869377
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagagga 162  Q
    |||||||||| ||||||| || | |||||| ||||||||||||||||||||||||    
T  39869323 tatatatatagggcatatcaaattagatgagtttttaaatgagagggtgagagga 39869377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 50546115 - 50546054
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatc 169  Q
    |||||||||| ||||||| |||| ||| || |||| |||||||||||| |||||||||||||    
T  50546115 tatatatatagggcatatcaagtaagaggacttttaaaatgagagggtaagaggattaaatc 50546054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 12644903 - 12644860
Alignment:
Q  139 tttttaaatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||| ||||||||||||||||||||||||| | |||||||||||    
T  12644903 ttttaaaatgagagggtgagaggattaaataagaacccttagat 12644860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 2070778 - 2070848
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataaccctt 178  Q
    |||||||| | ||||||| |||||||| || |||| |||||||||||||||| | || ||| |||||||||    
T  2070778 tatatatagagggcatatcaagtgagaagacttttaaaatgagagggtgagatggtttaattataaccctt 2070848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 14237440 - 14237380
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaat 168  Q
    |||||||||||||||| | || | |||  | |||||||||||||||||||||||| |||||    
T  14237440 tatatatatatggcatttcaaataagagcactttttaaatgagagggtgagaggagtaaat 14237380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 15601514 - 15601450
Alignment:
Q  119 ggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatc 183  Q
    ||||||| |||||||| |  ||||||||||||||| |||||||| ||||| ||| ||||| ||||    
T  15601514 ggcatatcaagtgagagggctttttaaatgagaggatgagaggagtaaataatagcccttggatc 15601450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 20508602 - 20508676
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||||||||| ||||| | || |||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  20508602 tatatatatagggcatttcaaatgagatgactttttaaatgagagggtgagaggattaaatcacaaccattagat 20508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 32261257 - 32261204
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagagg 161  Q
    |||||||||||||||| | || |||||||| |||||||||||||||||||||||    
T  32261257 tatatatatatggcatttcaaatgagatgactttttaaatgagagggtgagagg 32261204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 18094492 - 18094440
Alignment:
Q  139 tttttaaatgagagggtgagaggattaaatcataacccttagatcaatcttta 191  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||| |||||||    
T  18094492 tttttaaatgagagggtaagaggattaaatcacaacccttaaatccatcttta 18094440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 14098487 - 14098561
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||||||||| ||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||| ||||||    
T  14098487 tatatatatagggcattttaaatgagaggactttttaaatgagagggtgagaggattaaatcacaaccattagat 14098561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 33574156 - 33574208
Alignment:
Q  145 aatgagagggtgagaggattaaatcataacccttagatcaatctttaccatga 197  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  33574156 aatgagagggtgagaggattaaattataacctttagatcaatctttaccatga 33574208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 42654131 - 42654206
Alignment:
Q  119 ggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaatctttacca 194  Q
    ||||||||||| |||| || |||| |||| ||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  42654131 ggcatattaagggagaggacttttaaaataagaggatgaaaggattaaatcataaccattagatcaatctttacca 42654206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 33574083 - 33574009
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||||||||| ||||||| |||||||| || |||| |||||||||||||||||||| |||| || ||||||||||    
T  33574083 tatatatatagggcatatcaagtgagaggacttttaaaatgagagggtgagaggatgaaataatgacccttagat 33574009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 10470051 - 10470105
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagagga 162  Q
    |||||||||||||||||| |||||||| || ||||||||||||||| ||||||||    
T  10470051 tatatatatatggcatatcaagtgagaggattttttaaatgagaggatgagagga 10470105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 42654228 - 42654272
Alignment:
Q  198 acatcagaattttagcacttccttcctactacgtgttttgtctct 242  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||    
T  42654228 acatcagaattttagcacttccttcctcctacgcgttttgtctct 42654272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 12696474 - 12696541
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacc 175  Q
    |||||||||| | ||| | || |||||||| ||||||||||||||||||||||||| |||| ||||||    
T  12696474 tatatatataggccatttcaaatgagatgactttttaaatgagagggtgagaggatcaaataataacc 12696541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 18861882 - 18861955
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||||||||||||||| | |||||||| || |||| |||||||| ||||||||| ||||||  ||||| ||||||    
T  18861882 tatatatatatggcatttcaagtgagaggacttttaaaatgaga-ggtgagagggttaaatgctaaccattagat 18861955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 39933469 - 39933505
Alignment:
Q  155 tgagaggattaaatcataacccttagatcaatcttta 191  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  39933469 tgagagggttaaatcataaccctttgatcaatcttta 39933505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 19638094 - 19638168
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||||||||| ||||| | || ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  19638094 tatatatatagggcatttcaaatgagaggaatttttaaatgagagggtgagaggattaaatcacaaccattagat 19638168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 20422937 - 20422982
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagg 153  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||||    
T  20422937 tatatatatagggcatatcaagtgagatgattttttaaatgagagg 20422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 39832081 - 39832006
Alignment:
Q  110 tatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaa 185  Q
    |||||||||||||| | ||||||||  | ||||||||||||||| |||||||| | | | |||||| |||||||||    
T  39832081 tatatatatggcatttcaagtgagagcactttttaaatgagaggatgagaggactcattaataaccattagatcaa 39832006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 43428467 - 43428522
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggat 163  Q
    |||||||| | ||||| |||| ||||| || |||||||||||||||||||||||||    
T  43428467 tatatataaagggcattttaaatgagaggactttttaaatgagagggtgagaggat 43428522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 49574100 - 49574152
Alignment:
Q  144 aaatgagagggtgagaggattaaatcataacccttagatcaatctttaccatga 197  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||| |||||    
T  49574100 aaatgagagg-tgagagggttaaatcacaacccttagatcaatcattatcatga 49574152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 49574779 - 49574726
Alignment:
Q  130 tgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatc 183  Q
    ||||| || |||||||||||||||||||||||| ||||| | |||| |||||||    
T  49574779 tgagaggactttttaaatgagagggtgagaggagtaaataacaaccattagatc 49574726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 21436549 - 21436601
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagag 160  Q
    |||||||||| ||||| | || ||||| || ||||||||||||||||||||||    
T  21436549 tatatatatagggcatttcaaatgagaggagtttttaaatgagagggtgagag 21436601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 9044177 - 9044237
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaat 168  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||| ||||    
T  9044177 tatatatatagggcattttaaatgagatgactttttaaatgagagggtgagaggatcaaat 9044237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 16723674 - 16723751
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaa 185  Q
    |||||||||| ||||| | || ||||| || |||| ||||||||||||||||||| ||||| | | ||||||||||||    
T  16723674 tatatatatagggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaataacagcccttagatcaa 16723751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 43307484 - 43307424
Alignment:
Q  125 ttaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaa 185  Q
    |||| |||||||| |||| ||||||||||||||||||| ||||| | | ||||||||||||    
T  43307484 ttaaatgagatgatttttaaaatgagagggtgagaggagtaaataacagcccttagatcaa 43307424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 36697695 - 36697750
Alignment:
Q  130 tgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagatcaa 185  Q
    ||||| || |||||||||||||||||||||||| ||||| | | ||||||||||||    
T  36697695 tgagaggactttttaaatgagagggtgagaggagtaaataacagcccttagatcaa 36697750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 24286736 - 24286781
Alignment:
Q  138 atttttaaatgagagggtgagaggattaaatcataacccttagatc 183  Q
    |||||||||||||||||||||||||| ||| || |||| |||||||    
T  24286736 atttttaaatgagagggtgagaggatgaaaccacaaccattagatc 24286781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 24287671 - 24287611
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaat 168  Q
    |||||||||| ||||| | || ||||| |  ||||||||||||||||||||||||| ||||    
T  24287671 tatatatatagggcatttcaaatgagagggttttttaaatgagagggtgagaggatgaaat 24287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 25230437 - 25230401
Alignment:
Q  155 tgagaggattaaatcataacccttagatcaatcttta 191  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  25230437 tgagagggttaaatcatagcccttagatcaatcttta 25230401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 36228496 - 36228579
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaa-tgagagggtgagaggattaaatcataacccttagatcaatcttta 191  Q
    |||||||||| ||||||| |||| ||| ||  ||||||| ||||||  ||||||| | |||||| ||||||||||||||||||||    
T  36228496 tatatatatagggcatatcaagtaagaggaccttttaaaatgagaga-tgagagggtgaaatcacaacccttagatcaatcttta 36228579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 43448544 - 43448493
Alignment:
Q  140 ttttaaatgagagggtgagaggattaaatcataacccttagatcaatcttta 191  Q
    ||||||||||||||||||||||||||||||| |||||||  ||| |||||||    
T  43448544 ttttaaatgagagggtgagaggattaaatcacaacccttgaatccatcttta 43448493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 19069308 - 19069252
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggatt 164  Q
    |||||||||| ||||| | ||  ||||||| ||||||||||||||||||||||||||    
T  19069308 tatatatatagggcatttcaaaagagatgactttttaaatgagagggtgagaggatt 19069252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 45433020 - 45432966
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagagga 162  Q
    |||||||||| ||||| | |||||||| || ||||||||||||||| ||||||||    
T  45433020 tatatatatagggcatttcaagtgagaggattttttaaatgagaggatgagagga 45432966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 14253962 - 14253995
Alignment:
Q  130 tgagatgaatttttaaatgagagggtgagaggat 163  Q
    |||||||| |||||||||||||||||||||||||    
T  14253962 tgagatgactttttaaatgagagggtgagaggat 14253995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 14255648 - 14255615
Alignment:
Q  130 tgagatgaatttttaaatgagagggtgagaggat 163  Q
    |||||||| |||||||||||||||||||||||||    
T  14255648 tgagatgactttttaaatgagagggtgagaggat 14255615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 15894643 - 15894599
Alignment:
Q  153 ggtgagaggattaaatcataacccttagatcaatctttaccatga 197  Q
    ||||||||| || |||| |||||||||||| ||||||||||||||    
T  15894643 ggtgagagggttgaatcctaacccttagattaatctttaccatga 15894599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 19068456 - 19068512
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggatt 164  Q
    |||||||| | ||||| | || ||||| || ||||||||||||||||||||||||||    
T  19068456 tatatatagagggcatttcaaatgagaggactttttaaatgagagggtgagaggatt 19068512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 31076921 - 31076977
Alignment:
Q  127 aagtgagatgaattttta-aatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||||||||||  ||||| ||||||||||||||||||| |||| || ||||||||||    
T  31076921 aagtgagatgacattttataatgagagggtgagaggataaaataatgacccttagat 31076977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 30784867 - 30784940
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagaggattaaatcataacccttagat 182  Q
    |||||||||||| ||| | || ||||| || |||||||||||||||||||||||| ||||||| |||| ||||||    
T  30784867 tatatatatatgacatttcaaatgagaggactttttaaatgagagggtgagagga-taaatcacaaccattagat 30784940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 25616841 - 25616893
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagag 160  Q
    |||||||||||||||| | || ||||| || ||||||||||||||||||||||    
T  25616841 tatatatatatggcatttcaaatgagaggactttttaaatgagagggtgagag 25616893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 38798449 - 38798501
Alignment:
Q  139 tttttaaatgagagggtgagaggattaaatcataacccttagatcaatcttta 191  Q
    |||| ||||||||||||| |||| |||||||||| ||||| ||||||||||||    
T  38798449 ttttaaaatgagagggtgggagggttaaatcatatcccttggatcaatcttta 38798501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 45631218 - 45631272
Alignment:
Q  108 tatatatatatggcatattaagtgagatgaatttttaaatgagagggtgagagga 162  Q
    ||||||||||||| || | || |||||| | ||||||||||||||||||||||||    
T  45631218 tatatatatatggtatttcaaatgagataattttttaaatgagagggtgagagga 45631272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 618 times since January 2019
Visitors: 2780