View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0337_high_3 (Length: 457)

Name: NF0337_high_3
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0337_high_3
NF0337_high_3
[»] chr7 (10 HSPs)
chr7 (24-358)||(46993327-46993680)
chr7 (290-429)||(39695432-39695571)
chr7 (32-237)||(7352257-7352468)
chr7 (24-199)||(39695161-39695332)
chr7 (13-199)||(7995013-7995196)
chr7 (347-429)||(46993845-46993927)
chr7 (290-376)||(7348763-7348849)
chr7 (63-133)||(11727326-11727396)
chr7 (384-429)||(11727283-11727328)
chr7 (48-173)||(46265261-46265386)
[»] chr2 (6 HSPs)
chr2 (290-429)||(31111785-31111924)
chr2 (30-230)||(13852163-13852370)
chr2 (24-236)||(31111492-31111711)
chr2 (30-161)||(4638239-4638374)
chr2 (64-161)||(36009278-36009375)
chr2 (52-161)||(38607073-38607182)
[»] chr8 (7 HSPs)
chr8 (16-231)||(44223219-44223442)
chr8 (32-199)||(7956272-7956439)
chr8 (24-199)||(35948906-35949079)
chr8 (24-161)||(17722390-17722527)
chr8 (353-424)||(35949203-35949274)
chr8 (369-429)||(37379749-37379809)
chr8 (16-105)||(34760832-34760921)
[»] scaffold0879 (2 HSPs)
scaffold0879 (16-231)||(467-695)
scaffold0879 (312-425)||(353-465)
[»] chr4 (6 HSPs)
chr4 (16-231)||(24466202-24466430)
chr4 (32-250)||(23107775-23108010)
chr4 (17-172)||(4413526-4413681)
chr4 (311-429)||(4413685-4413801)
chr4 (24-199)||(28319222-28319397)
chr4 (312-425)||(24466088-24466200)
[»] chr5 (5 HSPs)
chr5 (24-199)||(19947787-19947962)
chr5 (24-228)||(16746329-16746528)
chr5 (24-199)||(31895975-31896137)
chr5 (24-121)||(16746550-16746647)
chr5 (397-429)||(16746098-16746130)
[»] chr1 (11 HSPs)
chr1 (24-236)||(16584752-16584971)
chr1 (52-199)||(1161365-1161512)
chr1 (291-429)||(25787491-25787629)
chr1 (30-198)||(18461194-18461362)
chr1 (24-156)||(25785830-25785962)
chr1 (17-236)||(11619990-11620214)
chr1 (32-236)||(8084074-8084288)
chr1 (334-429)||(18461359-18461454)
chr1 (122-199)||(42009922-42009999)
chr1 (24-105)||(42009995-42010076)
chr1 (397-429)||(11620373-11620405)
[»] chr3 (3 HSPs)
chr3 (25-198)||(46655595-46655768)
chr3 (334-415)||(46655765-46655846)
chr3 (203-291)||(2095474-2095563)
[»] scaffold0565 (1 HSPs)
scaffold0565 (24-241)||(1724-1951)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 358
Target Start/End: Original strand, 46993327 - 46993680
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  46993327 tttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaaccaat 46993426  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaatt-------------aaatactttttaat 210  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||             ||||||||||||||    
T  46993427 ccgatgataaccacactccttattttactaatattatcgtacctcacacaaacttaaggttaagcccaaaattaaagtccaacataaaatactttttaat 46993526  T
Q  211 ccattcaatttctc------tcatctttatcttcatcacatctcataagtgactctttaatttctactacaaaagaaaccatagccgattcacgttggaa 304  Q
    ||||||||||||||      ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46993527 ccattcaatttctctcatcttcatcttcatcttcatctcatctcataagtgactctttaatttctactacaaaagaaaccctagccgattcacgttggaa 46993626  T
Q  305 ttggattgatttagtttggatgtttttatttaatttcatggtgaccataatttc 358  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  46993627 ttggattgatctagtttggatgtttttatttaatttcatggcgaccataatttc 46993680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 290 - 429
Target Start/End: Original strand, 39695432 - 39695571
Alignment:
Q  290 cgattcacgttggaattggattgatttagtttggatgtttttatttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaattt 389  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  39695432 cgattcacgttggaattggattgatttaatttggatgtttttatttaatttcatggcgaccataatttcatgatgtttaaatttcaggatgttttaattt 39695531  T
Q  390 cagtttccatggatttgttattttgactatgttttaattt 429  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  39695532 cagtttgcatggatttgttattttgactatgttttaattt 39695571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 7352468 - 7352257
Alignment:
Q  32 ggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 131  Q
    ||||||||| ||||| ||| |||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||||    
T  7352468 ggtttgaaaccgatccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T
Q  132 aaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaatt-------aaatactttttaatccattcaatttctc 224  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||||  ||||   ||||||||       |||||| |||||||||||||| ||||||    
T  7352369 aaccacactccttattttactaatattatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatacgttttaatccattcactttctc 7352270  T
Q  225 tcatctttatctt 237  Q
    ||||||| |||||    
T  7352269 tcatcttcatctt 7352257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 39695161 - 39695332
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  39695161 tttggttcggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaat 39695260  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    |  ||||||||| ||||| |||||||||    |||||| ||||||||||||||||| |||||   |||||||||||    
T  39695261 ctgatgataacctcactccttattttac----attatcttacctcacacaaacttatggttagacccaaaattaaa 39695332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 7995013 - 7995196
Alignment:
Q  13 atttgatcttttttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaacc 112  Q
    |||||| ||| ||||| ||||||  ||||||||| ||| |||| ||| | |||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  7995013 atttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaacc 7995112  T
Q  113 gatgaaccaatccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||| |||||  |||||||||| |||| || |||||||||||    
T  7995113 gatgaaccaatccgataataaccacactccttattttactaatattatcttacct--cacaaacttatggtt-aggccaaaattaaa 7995196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 347 - 429
Target Start/End: Original strand, 46993845 - 46993927
Alignment:
Q  347 gaccataatttcatgatgtttaaatttcagaatgttttaatttcagtttccatggatttgttattttgactatgttttaattt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46993845 gaccataatttcatgatgtttaaatttcagaatgttttaatttcagtttgcatggatttgttattttgactatgttttaattt 46993927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 7348849 - 7348763
Alignment:
Q  290 cgattcacgttggaattggattgatttagtttggatgtttttatttaatttcatggtgaccataatttcatgatgtttaaatttcag 376  Q
    ||||| |||||| ||||||||||||||| | || | |||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  7348849 cgatttacgttgaaattggattgatttaatctgaaagtttttatttaatttcatgacgaccataatttcatgatgttttaatttcag 7348763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 11727396 - 11727326
Alignment:
Q  63 gatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgataa 133  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||| |||||||    
T  11727396 gatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 11727328 - 11727283
Alignment:
Q  384 taatttcagtttccatggatttgttattttgactatgttttaattt 429  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||    
T  11727328 taatttcagtttgtatggatttgatattttgactatgttttaattt 11727283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 46265386 - 46265261
Alignment:
Q  48 gaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttatt 147  Q
    ||||||||| || | ||||| |||||||||||||    |||  |||||| |||||||  ||||||||||||||||  ||||| ||||  ||||| | |||    
T  46265386 gaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcattttgagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcatt 46265287  T
Q  148 ttactaatattatcgtacctcacaca 173  Q
    |||||| |||| || | |||||||||    
T  46265286 ttactattattgtccttcctcacaca 46265261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 290 - 429
Target Start/End: Original strand, 31111785 - 31111924
Alignment:
Q  290 cgattcacgttggaattggattgatttagtttggatgtttttatttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaattt 389  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||    
T  31111785 cgatttacgttggaattggattgatttagtttggatgtttttatttaatttcatggcgaccataatttcatgatgtttaaatttcaggatgttttaagtt 31111884  T
Q  390 cagtttccatggatttgttattttgactatgttttaattt 429  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  31111885 cagtttgcatgaatttgttattttgactatgttttaattt 31111924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 13852370 - 13852163
Alignment:
Q  30 tcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatg 129  Q
    ||||||||||| |||||  || ||||| || | |||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||   ||    
T  13852370 tcggtttgaaaccgatccaaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttg 13852271  T
Q  130 ataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaatt-------aaatactttttaatccattcaatttc 222  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| | ||||||||       ||||| ||||||||||||||| ||||    
T  13852270 ataaccacactccttattttattaatattatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatccattcactttc 13852171  T
Q  223 tctcatct 230  Q
    ||||||||    
T  13852170 tctcatct 13852163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 31111492 - 31111711
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| |||||||||||  |||||||| |||| ||| | |||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||    
T  31111492 tttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaat 31111591  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaatt-------aaatactttttaatccattc 216  Q
    |   |||||||||||||  ||||||||||||||||||| ||||||||||||| ||| ||||| |  |||||||       |||||||||||||| |||||    
T  31111592 ctggtgataaccacacttcttattttactaatattatcctacctcacacaaaattatggttaggcgcaaaattaaatataaaatactttttaattcattc 31111691  T
Q  217 aatttctctcatctttatct 236  Q
    | ||||||||||||| ||||    
T  31111692 actttctctcatcttcatct 31111711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 4638239 - 4638374
Alignment:
Q  30 tcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatg 129  Q
    ||||||||||||||||| ||| ||||| |  ||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||    
T  4638239 tcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatg 4638338  T
Q  130 ataaccacactcttta----ttttactaatattatc 161  Q
    |||||||||||| |||    ||||||||||||||||    
T  4638339 ataaccacactccttaattcttttactaatattatc 4638374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 36009278 - 36009375
Alignment:
Q  64 atctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactaatattatc 161  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatc 36009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 38607073 - 38607182
Alignment:
Q  52 caatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 151  Q
    ||||| || |||| || |||||||| ||||| ||||| ||||||| ||||||| | ||||||||||||| ||   ||| |||||||||||   |||||||    
T  38607073 caatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactcgccattttac 38607172  T
Q  152 taatattatc 161  Q
    |||| |||||    
T  38607173 taatgttatc 38607182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 44223442 - 44223219
Alignment:
Q  16 tgatcttttttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgat 115  Q
    ||||||| ||||| || |||| ||| ||||||||| |||||||| |  |||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  44223442 tgatcttgtttggttcagtttaaaaccgatctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgat 44223343  T
Q  116 gaaccaatccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaatt-------aaatac-ttttt 207  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||| | ||||||||       |||||| |||||    
T  44223342 gaaccaatccgatgataaccacactccttattttacaaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatactttttt 44223243  T
Q  208 aatccattcaatttctctcatctt 231  Q
    |||||||||| |||||||||||||    
T  44223242 aatccattcactttctctcatctt 44223219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 7956439 - 7956272
Alignment:
Q  32 ggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 131  Q
    ||||||||| ||||  ||| |||||||| | |||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||| |||||    
T  7956439 ggtttgaaaccgattcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgat 7956340  T
Q  132 aaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||    
T  7956339 aaccatactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 7956272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 35948906 - 35949079
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| ||||| |||||| || ||   |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  35948906 tttggttcggtttgaaaccgatccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaat 35949005  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    || |||||||| ||| || ||||||||||||||||||| |||||  |||||||||| ||||| | |||||||||||    
T  35949006 ccgatgataacaacattccttattttactaatattatcctacct--cacaaacttatggttaggcccaaaattaaa 35949079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 17722527 - 17722390
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| | ||| |||  ||||||| | ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  17722527 tttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaat 17722428  T
Q  124 ccaatgataaccacactctttattttactaatattatc 161  Q
    || ||||||||||||||| ||| |||||||||||||||    
T  17722427 ccgatgataaccacactcattactttactaatattatc 17722390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 35949203 - 35949274
Alignment:
Q  353 aatttcatgatgtttaaatttcagaatgttttaatttcagtttccatggatttgttattttgactatgtttt 424  Q
    |||||||||||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  35949203 aatttcatgatgtttaaatttcatgatgttttaattttagtttgcatggatttgttattttgactatgtttt 35949274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 37379809 - 37379749
Alignment:
Q  369 aatttcagaatgttttaatttcagtttccatggatttgttattttgactatgttttaattt 429  Q
    |||||||  ||||||||||||||||||   ||||||||||||||||| |||||||||||||    
T  37379809 aatttcatgatgttttaatttcagtttgtttggatttgttattttgagtatgttttaattt 37379749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 34760921 - 34760832
Alignment:
Q  16 tgatcttttttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccg 105  Q
    ||||||| ||||| ||||||  ||||||| | ||| ||| | || | |||||||||||||||||||| ||||| || |||| ||||||||    
T  34760921 tgatcttgtttggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 695 - 467
Alignment:
Q  16 tgatcttttttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgat 115  Q
    ||||||| ||||| ||||||||||| ||||| ||| |||| ||| | ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  695 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 596  T
Q  116 gaaccaatccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggtt-------------aagtccaaaattaaatac 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||             |||||||| || ||||||    
T  595 gaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatac 496  T
Q  203 tttttaatccattcaatttctctcatctt 231  Q
    ||||||||||||||| |||||||||||||    
T  495 tttttaatccattcactttctctcatctt 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 465 - 353
Alignment:
Q  312 gatttagtttggatgtttttatttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaatttcagtttccatggatttgttatt 411  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||| |||||||||||||| |||| ||||||||||    
T  465 gatttagtttggatgtttttatttaatttcatggagaccataatttaatgatgtttaaatttcaagatg-tttaatttcagtttgcatgtatttgttatt 367  T
Q  412 ttgactatgtttta 425  Q
    ||||||||||||||    
T  366 ttgactatgtttta 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 24466430 - 24466202
Alignment:
Q  16 tgatcttttttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgat 115  Q
    ||||||| ||||| ||||||||||| ||||| ||| |||| ||| | ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  24466430 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 24466331  T
Q  116 gaaccaatccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggtt-------------aagtccaaaattaaatac 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||             |||||||| || ||||||    
T  24466330 gaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatac 24466231  T
Q  203 tttttaatccattcaatttctctcatctt 231  Q
    ||||||||||||||| |||||||||||||    
T  24466230 tttttaatccattcactttctctcatctt 24466202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 23108010 - 23107775
Alignment:
Q  32 ggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaacc----aatccaa 127  Q
    ||||||||| ||||| ||| |||||||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||| |    
T  23108010 ggtttgaaaccgatccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccga 23107911  T
Q  128 tgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggtt-------------aagtccaaaattaaatactttttaatccat 214  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||             |||||||| || ||||||||||||||||||    
T  23107910 tgataaccatactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccat 23107811  T
Q  215 tcaatttctctcatctttatcttcatcacatctcat 250  Q
    ||| ||||||| ||| | ||||||||| ||||||||    
T  23107810 tcactttctctaatcatcatcttcatctcatctcat 23107775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 4413526 - 4413681
Alignment:
Q  17 gatcttttttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatg 116  Q
    |||||| ||||| ||||||| ||| ||||| ||| |||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||     
T  4413526 gatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgata 4413625  T
Q  117 aaccaatccaatgataaccacactctttattttactaatattatcgtacctcacac 172  Q
    ||||||||| ||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  4413626 aaccaatccgatgataatcacactccttattttactagtattatcctacctcacac 4413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 311 - 429
Target Start/End: Original strand, 4413685 - 4413801
Alignment:
Q  311 tgatttagtttggatgtttttatttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaatttcagtttccatggatttgttat 410  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  4413685 tgatttagtttggatgtttttatttaatttcacggtgaccataatttcatgatgtttaaatttcaaaatgttttaatttcagttggcatggatttgttat 4413784  T
Q  411 tttgactatgttttaattt 429  Q
    ||||||  |||||||||||    
T  4413785 tttgac--tgttttaattt 4413801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 28319397 - 28319222
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| || || ||| ||||| ||   ||| || ||||||||||||||||||| ||||||||||||| |||||| | |||||| ||||    
T  28319397 tttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaat 28319298  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    |  ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||    
T  28319297 ctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 28319222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 24466200 - 24466088
Alignment:
Q  312 gatttagtttggatgtttttatttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaatttcagtttccatggatttgttatt 411  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||| |||||||||||||| |||| ||||||||||    
T  24466200 gatttagtttggatgtttttatttaatttcatggagaccataatttaatgatgtttaaatttcaagatg-tttaatttcagtttgcatgtatttgttatt 24466102  T
Q  412 ttgactatgtttta 425  Q
    ||||||||||||||    
T  24466101 ttgactatgtttta 24466088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 19947787 - 19947962
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| || |||||||| |||||  || ||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  19947787 tttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaat 19947886  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||    
T  19947887 ccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 19947962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 16746528 - 16746329
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| |||||  || |||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  16746528 tttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaaccaat 16746429  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaatactttttaatccattcaatttct 223  Q
    || ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||     ||||| ||||||||||||||| ||| |    
T  16746428 ccgatgataacctcactccttattttactaatattatcctacctcacacaaacttatggttaggccca-----aaataatttttaatccattcacttttt 16746334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 31895975 - 31896137
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| ||||||||| ||||| || | ||||||||||||||||||||||| || || |||||| ||||||||||||||              
T  31895975 tttggttcggtttgaaaccgatctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccg---------- 31896064  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
       ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||    
T  31896065 ---atgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 31896137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 16746647 - 16746550
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaacca 121  Q
    ||||| ||||||||||| |||||  || |||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  16746647 tttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 429
Target Start/End: Complemental strand, 16746130 - 16746098
Alignment:
Q  397 catggatttgttattttgactatgttttaattt 429  Q
    |||||||||||||||||||||||||||||||||    
T  16746130 catggatttgttattttgactatgttttaattt 16746098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 16584971 - 16584752
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| ||||| ||| |||||||  | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  16584971 tttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaat 16584872  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaatt-------aaatactttttaatccattc 216  Q
    |  |||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||   ||||||||       ||||||||||||||||||||    
T  16584871 ctgatgataaccaaactccttattttactaatattatcatacctcacacaaacttatggttagacccaaaattaaacataaaatactttttaatccattc 16584772  T
Q  217 aatttctctcatctttatct 236  Q
    | ||||||| ||||| ||||    
T  16584771 actttctctaatcttcatct 16584752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 1161512 - 1161365
Alignment:
Q  52 caatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 151  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1161512 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttac 1161413  T
Q  152 taatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    |||||||||| ||||||||||||||||| |||| || |||||||||||    
T  1161412 taatattatcctacctcacacaaacttatggttcagcccaaaattaaa 1161365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 291 - 429
Target Start/End: Original strand, 25787491 - 25787629
Alignment:
Q  291 gattcacgttggaattggattgatttagtttggatgtttttatttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaatttc 390  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||    
T  25787491 gattcacgttggaattggattgatttagtttgaatgtttttatttaatttcatggcgtccataatttcatgatgtttaaatttctggatgttttaatttc 25787590  T
Q  391 agtttccatggatttgttattttgactatgttttaattt 429  Q
    | ||| |||||||| ||||||||||||||||||||||||    
T  25787591 aatttgcatggattggttattttgactatgttttaattt 25787629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 18461194 - 18461362
Alignment:
Q  30 tcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatg 129  Q
    ||||||| ||||||||||| | ||||| || | ||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||    
T  18461194 tcggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatg 18461293  T
Q  130 ataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaa 198  Q
    |||||||||||| ||| |||| ||||||||||  ||||| |||||||||| ||||||| ||||||||||    
T  18461294 ataaccacactcattaatttattaatattatccaacctcgcacaaacttatggttaagcccaaaattaa 18461362  T

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Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 25785830 - 25785962
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||| ||||| ||| |||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25785830 tttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaat 25785929  T
Q  124 ccaatgataaccacactctttattttactaata 156  Q
    || |||||||||||| |||||||||||||||||    
T  25785930 ccgatgataaccacattctttattttactaata 25785962  T

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Target: chr1; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 11619990 - 11620214
Alignment:
Q  17 gatcttttttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatg 116  Q
    |||||| ||||| || |||||||| |||||  ||  ||||||| | |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  11619990 gatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatg 11620089  T
Q  117 aaccaatccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaatt-------aaatactttttaa 209  Q
    ||||||||| ||||||  ||||||  ||||||||||||||||||| |||||  |||||||||| ||||||  ||||||||       |||||||||||||    
T  11620090 aaccaatccgatgatactcacactacttattttactaatattatcctacct--cacaaacttatggttaaacccaaaattaaacatgaaatactttttaa 11620187  T
Q  210 tccattcaatttctctcatctttatct 236  Q
    || ||||| |||||| |||||| ||||    
T  11620188 tcaattcactttctcccatcttcatct 11620214  T

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Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 8084074 - 8084288
Alignment:
Q  32 ggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 131  Q
    ||||||||| | ||| ||| |||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||||| |||||    
T  8084074 ggtttgaaaccaatccgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgat 8084173  T
Q  132 aaccacactctttattttactaat---attatcgtacctcacacaaacttaaggttaagtccaaaatt-------aaatactttttaatccattcaattt 221  Q
    |||||||||| |||||||||||||    ||||| ||||||||||||||| | ||||| |  |||||||       ||||| ||||||||| ||||| |||    
T  8084174 aaccacactccttattttactaatccatttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaataatttttaatctattcacttt 8084273  T
Q  222 ctctcatctttatct 236  Q
    |||||||||| ||||    
T  8084274 ctctcatcttcatct 8084288  T

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Target: chr1; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 334 - 429
Target Start/End: Original strand, 18461359 - 18461454
Alignment:
Q  334 ttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaatttcagtttccatggatttgttattttgactatgttttaattt 429  Q
    |||||||||||| ||||||||||||| ||||||||||||| || | ||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  18461359 ttaatttcatggcgaccataatttcacgatgtttaaattttaggaagttttaagtttagtttgcatggatttgttattttgactatgttttaattt 18461454  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 42009999 - 42009922
Alignment:
Q  122 atccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaaa 199  Q
    |||| ||||||||||||||| |||| ||||||||| |||| ||||||||||||||||| ||||| | | |||||||||    
T  42009999 atccgatgataaccacactccttatattactaatagtatcctacctcacacaaacttatggttaggcctaaaattaaa 42009922  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 42010076 - 42009995
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccg 105  Q
    ||||| ||||||||||| |||||  || |||| ||| | |||||||||| |||||  |||||||| ||||||| ||||||||    
T  42010076 tttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 429
Target Start/End: Original strand, 11620373 - 11620405
Alignment:
Q  397 catggatttgttattttgactatgttttaattt 429  Q
    ||||||||| |||||||||||||||||||||||    
T  11620373 catggatttattattttgactatgttttaattt 11620405  T

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Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 46655595 - 46655768
Alignment:
Q  25 ttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaatc 124  Q
    |||| ||||||||||| ||||| ||| ||||| || |  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  46655595 ttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatc 46655694  T
Q  125 caatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggttaagtccaaaattaa 198  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||| ||||| | ||||||||||    
T  46655695 caatgataaccacacttcttattttactaatattatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 46655765 - 46655846
Alignment:
Q  334 ttaatttcatggtgaccataatttcatgatgtttaaatttcagaatgttttaatttcagtttccatggatttgttattttga 415  Q
    |||||||||||| ||||||| |||||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||    
T  46655765 ttaatttcatggcgaccatattttcatgatgtttaaatttcaagatgttttaaattcagtttgcatggatttgttattttga 46655846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 2095474 - 2095563
Alignment:
Q  203 tttttaatccattcaatttctctcatctttatcttcatcacatctcataag--tgactctttaatttctactacaaaagaaaccatagccg 291  Q
    ||||||||||||||| ||||||| ||| ||||||||||| |||||||| ||   |||||||| |||||||||| |||||||||| ||||||    
T  2095474 tttttaatccattcactttctctaatcattatcttcatc-catctcattagccagactctttcatttctactaaaaaagaaaccctagccg 2095563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 1951 - 1724
Alignment:
Q  24 tttgggtcggtttgaaatcgatctgaatcaatcgaatctgatctagtttggtttggttcatggttcttcatttcgagatccgtgaaaccgatgaaccaat 123  Q
    ||||| ||||||||||||||||| ||| ||||| || |||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  1951 tttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaaccaat 1852  T
Q  124 ccaatgataaccacactctttattttactaatattatcgtacctcacacaaacttaaggtt------------aagtccaaaattaaatactttttaatc 211  Q
    || |||||||| |||||| ||||||||||||||||||  |||||  |||||||||| ||||            || ||||| || |||||||||||||||    
T  1851 ccgatgataacaacactccttattttactaatattattctacct--cacaaacttatggttaggttaaaattaaaatccaacataaaatactttttaatc 1754  T
Q  212 cattcaatttctctcatctttatcttcatc 241  Q
    |||||| ||||||||||| | |||||||||    
T  1753 cattcactttctctcatcatcatcttcatc 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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