View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0337_high_6 (Length: 342)
Name: NF0337_high_6
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0337_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 92 - 326
Target Start/End: Original strand, 37316181 - 37316415
Alignment:
| Q |
92 |
catttaaatggtttaacttttctttcctccatattctagtctacttaatcttggtttctcacgttatagaaggttactctctttaagtaaattattacag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316181 |
catttaaatggtttaacttttctttcctccatattctagtctacttaatcttggtttctcacgttatagaaggttactctctttaagtaaattattacag |
37316280 |
T |
|
| Q |
192 |
tacacgattaaattaaattacaagactaatcttcaatttgacaagtattttagagttcagccggaagctatgttagaatttgaattcggattttctcaaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316281 |
tacacgattaaattaaattacaagactaatcttcaatttgacaaatattttagagttcggtcgaaagctatgttagaatttgaattcggattttctcaaa |
37316380 |
T |
|
| Q |
292 |
caattcgtcatgaagttcattaatcatttattcat |
326 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37316381 |
caattcgtcatcaagttcattaatcatttattcat |
37316415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 610 times since January 2019
Visitors: 2779