View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0337_low_1 (Length: 543)
Name: NF0337_low_1
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0337_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 203 - 536
Target Start/End: Original strand, 7258005 - 7258338
Alignment:
| Q |
203 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258005 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
7258104 |
T |
|
| Q |
303 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258105 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
7258204 |
T |
|
| Q |
403 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258205 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
7258304 |
T |
|
| Q |
503 |
ttgcattcttttagtatgataaatctctctgctg |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7258305 |
ttgcattcttttagtatgataaatctctctgctg |
7258338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 7257902 - 7257961
Alignment:
| Q |
95 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7257902 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
7257961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 7257800 - 7257862
Alignment:
| Q |
27 |
catcatcataaacaggtgaatctcggaatgaattgaagggcctctcagaagagaaattattaa |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7257800 |
catcatcataaacaggtgaatctcggaatgaactgaagggcctctcagaagagaaattattaa |
7257862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 359 times since January 2019
Visitors: 2759