View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0337_low_12 (Length: 277)
Name: NF0337_low_12
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0337_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 32640241 - 32640027
Alignment:
| Q |
2 |
aaaaaactaccttaatttcagtgtgttagagaaatcctaattacaaaccctcaacatacaaatgataaaaccatatgtggtctaacggtattgagtttat |
101 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640241 |
aaaaaactacctaaatttcagtgtgttagagaaatcctaattacaaaccctcaacctacaaatgataaaaccatatgtggtctaacggtattgagtttat |
32640142 |
T |
|
| Q |
102 |
attactannnnnnncgttttctcacttgacctctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgca |
201 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640141 |
attactatttttttcgttttctcacttgacctctataaatacaccataccattcatccaaattctcaatcatttttccataccattatacttcttttgca |
32640042 |
T |
|
| Q |
202 |
tcatgcctgcttctt |
216 |
Q |
| |
|
||||||||||||||| |
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| T |
32640041 |
tcatgcctgcttctt |
32640027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 32635349 - 32635435
Alignment:
| Q |
116 |
cgttttctcacttgacctctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
32635349 |
cgttttctcacttgacctctataaatacaccataccattcatccaaattcaaaatcattttttcataccattatacttcttttgcat |
32635435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 33267890 - 33267846
Alignment:
| Q |
230 |
tttaaattacatatcagaatatgagtcgtctgatcttcatatcac |
274 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
33267890 |
tttaaagtacatatcataatatgagtcgtctgatcttcatctcac |
33267846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 377294 - 377349
Alignment:
| Q |
147 |
ataccatttatccaaattctcaatcatttttccataccattatacttcttttgcat |
202 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| ||||| || |||||||||||||| |
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|
| T |
377294 |
ataccattcatccaaattcacaatcattttttcatacatttctacttcttttgcat |
377349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 38349628 - 38349700
Alignment:
| Q |
134 |
ctataaatacaccataccatttatccaaattctcaatcatttttccataccattatacttcttttgcatcatg |
206 |
Q |
| |
|
|||| ||| |||||||| ||| |||||||||| ||||||||||| ||||| || ||||| ||||| |||||| |
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|
| T |
38349628 |
ctattaattcaccatactattcatccaaattcacaatcattttttcatacatttctacttattttgaatcatg |
38349700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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