View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0337_low_18 (Length: 205)
Name: NF0337_low_18
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0337_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 33267846 - 33267954
Alignment:
| Q |
92 |
gtgagatgaagatcagacgactcatattatgatatgtaatttaaaataaaattaataaattaagaattagagttgttcgatctatatccaagggtagaga |
191 |
Q |
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| T |
33267846 |
gtgagatgaagatcagacgactcatattatgatatgtactttaaagtaaaattaataaagtaagaattagagttgttcgatctttattcaacggtagaga |
33267945 |
T |
|
| Q |
192 |
taccttgat |
200 |
Q |
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| T |
33267946 |
taccttgat |
33267954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40174880 - 40174934
Alignment:
| Q |
1 |
ccggaggaatacctctaccagcagaacgtccaattccaggaccagccaatgcagc |
55 |
Q |
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| T |
40174880 |
ccggaggaatacctctaccagcagcacgtccaattccaggaccagccattgcagc |
40174934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 34400738 - 34400686
Alignment:
| Q |
3 |
ggaggaatacctctaccagcagaacgtccaattccaggaccagccaatgcagc |
55 |
Q |
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| T |
34400738 |
ggaggaatacctcttccagcagcacgaccaattccaggaccagccattgcagc |
34400686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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