View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0337_low_2 (Length: 477)
Name: NF0337_low_2
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0337_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Complemental strand, 7726604 - 7726172
Alignment:
| Q |
10 |
aagaatattgaataaattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaattcgggcaatgatta |
109 |
Q |
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| T |
7726604 |
aagaatattgaataaattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaattcgggcaatgatta |
7726505 |
T |
|
| Q |
110 |
atgtgtttgcaacacaaaataatttgttgttttaattgaatcacaattaatagactatgttcaagggagttgaagtagagtatggtgaagtttaatatca |
209 |
Q |
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| T |
7726504 |
atgtgtttgcaacacaaaataatttgttgttttaattgaatcacaattaatagactatgttcaagggagttgaagtagagtatggtgaagtttaatttca |
7726405 |
T |
|
| Q |
210 |
tcccttagtgtagcctctatgaaataagtttctgcacaagttcaatttttcttagtttggatgtggttattgagaccttctctttgtgcagaagataaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
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| T |
7726404 |
tcccttagtgtagcctctatgaaataagtttctgcacaagttcaatttttcttagttttgatctgattattgagaccttctctttgtgcagaagataaac |
7726305 |
T |
|
| Q |
310 |
aagagtgcaattatccatttctaagagttaatttggtcatggggtggggatattgaccccacatctttactctagtttctgcttaatataaatactgcgt |
409 |
Q |
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| T |
7726304 |
aagagtgcaattatccatttctaagagttaatttggtcatggggtggggatattgaccccacatctttactctagtttctgcttaatataaatacggcgt |
7726205 |
T |
|
| Q |
410 |
gtttcttgtaatttcatcgatgaggttgcatgc |
442 |
Q |
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| T |
7726204 |
gtttcttgtaatttcatcgatgaggttgcatgc |
7726172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 100 - 346
Target Start/End: Complemental strand, 7738717 - 7738466
Alignment:
| Q |
100 |
gcaatgattaatgtgtttgcaacacaaaataatttgttgttttaattgaatcacaattaata-------gactatgttcaagggagttgaagtagagtat |
192 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||| |||||||| ||||| |||||| ||||||||| | |||||||| |||||||||| |
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| T |
7738717 |
gcaatgattattgtgtttgcaacgtaaaataattagttgtcttaattgagtcacagttaatacttaatagactatgttaaggggagttggagtagagtat |
7738618 |
T |
|
| Q |
193 |
ggtgaagtttaatatcatcccttagtgtagcctctatgaaataagtttctgcacaagttcaatttttcttagtttggatgtggttattgagaccttctct |
292 |
Q |
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|||||||||||| ||| |||||||||| |||||||| | ||||||||||| |||||||| |||| || ||||||||||||||||||||| | ||| |
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| T |
7738617 |
agtgaagtttaatttcaggccttagtgtaacctctatgcattaagtttctgcgcaagttcagattttgttcctttggatgtggttattgagac--tatct |
7738520 |
T |
|
| Q |
293 |
ttgtgcagaagataaacaagagtgcaattatccatttctaagagttaatttggt |
346 |
Q |
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| T |
7738519 |
ctgtgcaaaatataaacaagaatgtagttatcagcttctaagtgttaatttggt |
7738466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 7739100 - 7739015
Alignment:
| Q |
18 |
tgaataaattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaattcgggcaa |
103 |
Q |
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| T |
7739100 |
tgaataaattctgatgatgtttttgcgacttgagactttgctcgattagagacctttggactagtgcgaagtttaaatttgggcaa |
7739015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 1094903 - 1094975
Alignment:
| Q |
24 |
aattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaatt |
96 |
Q |
| |
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|||| |||||||||||||||||||||||||||| | ||||||| |||||| ||| ||||| ||||| |||||| |
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| T |
1094903 |
aattttgatgatgttttggcgacttgagacttttcacgattagcgaccttaggactagtgagaagtgtaaatt |
1094975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 7736853 - 7736741
Alignment:
| Q |
101 |
caatgattaatgtgtttgcaacacaaaataatttgttgttttaattgaatcac--------aattaatagactatgttcaagggagttgaagtagagtat |
192 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||| |||||||| |||| | ||||||||||||||||| ||||||| ||||||||| |
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| T |
7736853 |
caatgattattgtgtttgcaacgtaaaataatttgttgtcttaattgagtcacagttaaatacttaatagactatgttcaggggagttagagtagagtac |
7736754 |
T |
|
| Q |
193 |
ggtgaagtttaat |
205 |
Q |
| |
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|||||||||||| |
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|
| T |
7736753 |
agtgaagtttaat |
7736741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 7736737 - 7736616
Alignment:
| Q |
223 |
cctctatgaaataagtttctgcacaagttcaatttttcttagtttggatgtggttattgagaccttctctttgtgcagaagataaacaagagtgcaatta |
322 |
Q |
| |
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|||||||| | ||| ||||||| |||||||| |||| || ||||||||||||||||||||| | ||| |||||| || |||||| ||| || | ||| |
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| T |
7736737 |
cctctatgcattaactttctgcgcaagttcagatttttttcttttggatgtggttattgagac--tatctctgtgcaaaatataaactagaatgtagtta |
7736640 |
T |
|
| Q |
323 |
tccatttctaagagttaatttggt |
346 |
Q |
| |
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|| ||||||| ||||||||||| |
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| T |
7736639 |
tcagcttctaagtgttaatttggt |
7736616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 9891997 - 9891935
Alignment:
| Q |
34 |
atgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaatt |
96 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||| || ||| ||||| ||||| |||||| |
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| T |
9891997 |
atgttttggcgacttgagacttttcacgattagagacgttaggactagtgagaagtgtaaatt |
9891935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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