View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0337_low_3 (Length: 470)
Name: NF0337_low_3
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0337_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 130 - 360
Target Start/End: Original strand, 23551561 - 23551792
Alignment:
| Q |
130 |
taatggagataacatttcttattaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaaacaacacaatatctgtatgtaatgttaaggttt |
229 |
Q |
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| T |
23551561 |
taatgtagattacatttcttattaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaaacaacacagtatctgtatgtaatgttaaggttt |
23551660 |
T |
|
| Q |
230 |
t-ttggaagtgttgatgtgatattagatgttaggtggaatgaccgtcaacaataacatgattggagacaagtgtgttcattaccttatattgttgtagac |
328 |
Q |
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| T |
23551661 |
ttttggaagtgttgatgtgatattagatattaggtggaatgaccgtcaacaataacatgattggagacaagtgtgttcattaccttatattgttgtagac |
23551760 |
T |
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| Q |
329 |
agtctatcacacacaatcattctgatggttac |
360 |
Q |
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| T |
23551761 |
cgtctatcacacacaataattctgatggttac |
23551792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 97 - 339
Target Start/End: Complemental strand, 30835078 - 30834837
Alignment:
| Q |
97 |
atatgtatgtaatgttaaggtttttggaagtgttaatggagataacatttcttattaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaa |
196 |
Q |
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| T |
30835078 |
atatgtatgtcatgttaaggtttttggaagtgttaatgtagataacatttcttataaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaa |
30834979 |
T |
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| Q |
197 |
acaacacaatatctgtatgtaatgttaaggttttttggaagtgttgatgtgatattagatgttaggtggaatgaccgtcaacaataacatgattggagac |
296 |
Q |
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| T |
30834978 |
acaacacagtatatgtatgtaatgttaaggt-ttttggaaatgttgatgtgatattagatgttaggtggaatgaccgtcaacaataacatgattggagac |
30834880 |
T |
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| Q |
297 |
aagtgtgttcattaccttatattgttgtagacagtctatcaca |
339 |
Q |
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| T |
30834879 |
aggtgtgttcattaccttatattgttgtagaccatctatcaca |
30834837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 137 - 339
Target Start/End: Complemental strand, 30816016 - 30815815
Alignment:
| Q |
137 |
gataacatttcttattaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaaacaacacaatatctgtatgtaatgttaaggttttttggaa |
236 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||| |
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| T |
30816016 |
gataacatttcttataaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaaacaacacagtatatgtatctaatgttaaggttttt-ggaa |
30815918 |
T |
|
| Q |
237 |
gtgttgatgtgatattagatgttaggtggaatgaccgtcaacaataacatgattggagacaagtgtgttcattaccttatattgttgtagacagtctatc |
336 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
30815917 |
gtgttgatgtgatattagatgttaggtggaatgaatgtcaataataacatgattggaaacaactgtgttcattaccttatattgttgtagaccgtctatc |
30815818 |
T |
|
| Q |
337 |
aca |
339 |
Q |
| |
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||| |
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| T |
30815817 |
aca |
30815815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 30835149 - 30835040
Alignment:
| Q |
136 |
agataacatttcttattaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaaacaacacaatatctgtatgtaatgttaaggttttttgga |
235 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||| |
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| T |
30835149 |
agataacatttcttatgaaattttgaagtaaatgagacgtatttcttgcttaaaatcttaaacaacacagtatatgtatgtcatgttaaggt-ttttgga |
30835051 |
T |
|
| Q |
236 |
agtgttgatgt |
246 |
Q |
| |
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|||||| |||| |
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| T |
30835050 |
agtgttaatgt |
30835040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 30815946 - 30815913
Alignment:
| Q |
97 |
atatgtatgtaatgttaaggtttttggaagtgtt |
130 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
30815946 |
atatgtatctaatgttaaggtttttggaagtgtt |
30815913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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