View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0337_low_7 (Length: 426)
Name: NF0337_low_7
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0337_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 11030218 - 11029866
Alignment:
| Q |
30 |
ggtgtcgatgtccaatgttgttgacactagctgtgtcgatgtttctttgtcgttttcgttgcccgtgttagaatttgtggttaactattgtaacttttat |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
11030218 |
ggtgtcgatgtccaatgttgttgacactagctgtgtcgatgtttctttgtcattttcgttgcccgcgttagaatttgtggttaactattgaaacttttat |
11030119 |
T |
|
| Q |
130 |
gacctaac-tcatttgattggattacattagaccatttttgctttactatttcttctttc-----atacagtagactacaatgtaattctattttttctt |
223 |
Q |
| |
|
|||||||| |||||| |||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
11030118 |
gacctaacttcattttattggatttcatgagatcatttttgctttactatttcttctttcattctatacagtagattacaatgtaattctattttttctt |
11030019 |
T |
|
| Q |
224 |
attccttatgctgaagtgaattacattttattttcatat-------------tgttgnnnnnnnnccgttcagattttttac-ttttgtgttgttacata |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
11030018 |
attccttatgctgaagtgaattacattttattttcatattgtcgtctggttctgttattttttttccgttcagatttttaactttttgtgttgttacata |
11029919 |
T |
|
| Q |
310 |
cattctattttgcagtttggctaatgtcaaccaactttttagacaattttaag |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
11029918 |
cattctattttgcagtttggctaatgtcaaccaatttttgagacaattttaag |
11029866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 11029247 - 11029210
Alignment:
| Q |
379 |
tatcacaaacaagacgatactagaatgattgtcctatg |
416 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11029247 |
tatcacaaacaagacggtactagaatgattgtcctatg |
11029210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 478 times since January 2019
Visitors: 2766