View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0337_low_9 (Length: 304)
Name: NF0337_low_9
Description: NF0337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0337_low_9 |
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[»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 33267954 - 33267846
Alignment:
Q |
6 |
atcaaggtatctctaccgttggatatagatcgaacaactctaattcttaatttattaattttattttaaattacatatcataatatgagtcgtctgatct |
105 |
Q |
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T |
33267954 |
atcaaggtatctctaccgttgaataaagatcgaacaactctaattcttactttattaattttactttaaagtacatatcataatatgagtcgtctgatct |
33267855 |
T |
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Q |
106 |
tcatctcac |
114 |
Q |
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T |
33267854 |
tcatctcac |
33267846 |
T |
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Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 11725761 - 11725883
Alignment:
Q |
182 |
ttgaataaattctcccaaactctctcacaagagcttattattagtggtttgtgtaacctgttatttgtcatttcttgtactagattgataatcttatctc |
281 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| ||| | ||||| |
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T |
11725761 |
ttgaataagttctcccaaactctctcacaagagcttaatattagtggtttgtgtaacatggtatttgtcatttcttgtactagattgagaatatcatctc |
11725860 |
T |
 |
Q |
282 |
ttataacctgtaactatttcttt |
304 |
Q |
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T |
11725861 |
ttataacttgtaaatatttcttt |
11725883 |
T |
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Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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