View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0338_high_1 (Length: 390)
Name: NF0338_high_1
Description: NF0338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0338_high_1 |
 | |
|
| [»] scaffold0489 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 33733874 - 33734158
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33733874 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttttca |
33733972 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33733973 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatt |
33734072 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33734073 |
ttagtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
33734158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 53528678 - 53528398
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53528678 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaa--tcattctttaggtttttcaatttgagaattttgtgaattttttcaata |
53528581 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
53528580 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggatttta |
53528481 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53528480 |
gtgttgagatgtcaatctgaccattgtcaattggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
53528398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 30333368 - 30333646
Alignment:
| Q |
9 |
agcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttttcaat |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30333368 |
agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagaattttgtgaatttttcaat |
30333463 |
T |
|
| Q |
109 |
attgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||||||||||| |
|
|
| T |
30333464 |
attgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttag-tgggactatgaacattgtggatttt |
30333562 |
T |
|
| Q |
208 |
aatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
30333563 |
agtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagggagatgatga |
30333646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 1418115 - 1417833
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1418115 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaa---tcattctttaggtttttcaatttgagaattttgtgaattttttca |
1418019 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
1418018 |
atattgggaattcgagcattcacagtgaggattttgttgttataatttgattttgatattatcaataaaagtttatttaggactatgaacattgtggatt |
1417919 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1417918 |
ttagtgttgagatgtcaatctgaccattgtcaatggggattttgattgggtttgtgagaagttgtctattgagagtgagatgatga |
1417833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 25915398 - 25915115
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggttttt-caatttgagaattttgtgaattttt-caat |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
25915398 |
cagagatgcgagatcaatgatgagacgagagttggtaatgagaaaaaaaaaatcattctttaggttttttcaatttgagaattttgtgaattttttcaat |
25915299 |
T |
|
| Q |
109 |
attgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttt |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| || |||||||||||||||||||||| |
|
|
| T |
25915298 |
attgggaatttgagcattcacaatgaggattttgttgttatgatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggatttt |
25915199 |
T |
|
| Q |
208 |
aatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
25915198 |
agtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgggaagttgtctattgagagtgagatgatga |
25915115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 25265038 - 25264760
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25265038 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagaattttgtgaattttttcaata |
25264943 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
25264942 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatttta |
25264843 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25264842 |
gtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
25264760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 33294787 - 33295066
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttttc-aata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33294787 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaa---tcattctttaggtttttcaatttgagaattttgtgaatttttttaata |
33294883 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
33294884 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattattaataaaagtttagttgggactatgaacattgtggatttta |
33294983 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
33294984 |
gtgttgagatgttaatctgaccattatcaatggggattttgtttgggtttatgagaagttgtctattgagagtgagatgatga |
33295066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 19995413 - 19995696
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19995413 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaa--tcattctttaggtttttcaatttgagaattttgtgaattttttca |
19995510 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
19995511 |
atattgggaatttgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatt |
19995610 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19995611 |
ttagtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
19995696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 53355799 - 53355519
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53355799 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaa-----tcattctttaggtttttcaatttgagaattttgtgaattttttca |
53355705 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
53355704 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatt |
53355605 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53355604 |
ttagtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
53355519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 55948294 - 55948575
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55948294 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaacaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttttcaata |
55948392 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
55948393 |
ttgggaattcgagtattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttta |
55948492 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55948493 |
gtgttgagatgtcaatctgaccattgtcaatggagattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
55948575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 44252307 - 44252028
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caata |
109 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
44252307 |
cagagatgcgagatcaatgatgagacaagagttggtaatgaaaaaaaaa---tcattctttaggttttttaatttgagaattttgtgaattttttcaata |
44252211 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
44252210 |
ttgggaattcgatcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgagactatgaacattgtggatttta |
44252111 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44252110 |
gtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
44252028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 64 - 278
Target Start/End: Complemental strand, 39653829 - 39653613
Alignment:
| Q |
64 |
cattctttaggtttttcaatttgagaattttgtgaattttt-caatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-a |
161 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||||| ||||||||| |||||||||||||||||||| | | |
|
|
| T |
39653829 |
cattctttaggtttttcaatttggaagttttgtgaattttttcaatattgagaatttgagcattctcaatgaggactttgttgttataatttgattatga |
39653730 |
T |
|
| Q |
162 |
tattatcaataaaagcttagttgtgactatgaacattgtggattttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtg |
261 |
Q |
| |
|
|||||||||||| | || |||| ||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
39653729 |
tattatcaataagaattttgttgggactatgaacattgtggattttagtgttgaggcgtcaatctgaccattatcaatggggattttgtttgggtttgtg |
39653630 |
T |
|
| Q |
262 |
agaagttgtctattgag |
278 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
39653629 |
agatgttgtctattgag |
39653613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 31392990 - 31393268
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31392990 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagaattttgtgaattttttcaata |
31393085 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
31393086 |
ttggaaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgagactatgaacattgtggatttta |
31393185 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31393186 |
gtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
31393268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 45277105 - 45276827
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45277105 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagaattttgtgaattttttcaata |
45277010 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
45277009 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaattttagttgggactatgaacattgtggatttta |
45276910 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45276909 |
gtgttaagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
45276827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 8230954 - 8231232
Alignment:
| Q |
12 |
agagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caatat |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8230954 |
agagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaa---tcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
8231050 |
T |
|
| Q |
111 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggattttaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||| |||||||||||||||| |||||| |
|
|
| T |
8231051 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattaacaataaaagtttatttgagactatgaacattgtgaattttag |
8231150 |
T |
|
| Q |
210 |
tgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
8231151 |
tgttgagatgtcaatctgaccattgtcaatggagattttgtttgggtttgtgagaagttgtctattgagaatgagatgatga |
8231232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 21715993 - 21716259
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttt-tca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21715993 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagaattttgtgaattttttca |
21716088 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgattt-tatattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
21716089 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttag---------------ttgtggatt |
21716173 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21716174 |
ttagtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
21716259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 32882053 - 32882329
Alignment:
| Q |
13 |
gagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttt-tcaatatt |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
32882053 |
gagatgcgagatcaatgatgagacgagagtttgtaatgaaaaaaaaa---tcattctttaggtttttcaattttagaattttgtgaattttttcaatatt |
32882149 |
T |
|
| Q |
112 |
gggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggattttaat |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
32882150 |
gggagttcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaaaattagttcggactatgaacattgtggattttagt |
32882249 |
T |
|
| Q |
211 |
gttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
32882250 |
gttgagatgtcaatttgaccatagtcaatggg-gttttgtttgagtttgtgagaagttgtccattgagagtgagatgatga |
32882329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 40029155 - 40028893
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttttcaatat |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40029155 |
cagagatgtgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaatttttcaatat |
40029057 |
T |
|
| Q |
111 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggattttaa |
209 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40029056 |
tggaaattcgagcattcataatgaggattttgttgttataatttgattttgatattatcaa------------------tatgaacattgtggattttag |
40028975 |
T |
|
| Q |
210 |
tgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40028974 |
tgttgagatgtcaatctgaccattgtcaatgaggattttgtttggttttgtgagaagttgtctattgagagtgagatgatga |
40028893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 33258562 - 33258281
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
33258562 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagagttttgtgaattttttca |
33258467 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33258466 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatt |
33258367 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33258366 |
ttagtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
33258281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 33278734 - 33278453
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
33278734 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagagttttgtgaattttttca |
33278639 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33278638 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatt |
33278539 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33278538 |
ttagtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
33278453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 7654621 - 7654900
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttttcaatat |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7654621 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaa--tcattctttaggtttttcaatttaagaattttgtgaatttttcaatat |
7654718 |
T |
|
| Q |
111 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggattttaa |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
7654719 |
tgggaattcgagtattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttag |
7654818 |
T |
|
| Q |
210 |
tgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
7654819 |
tgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgaaaagttgtctattgagagtgagatgatga |
7654900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 36146278 - 36146555
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttttcaatat |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36146278 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagaattttgtgaatttttcaatat |
36146373 |
T |
|
| Q |
111 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggattttaa |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
36146374 |
tgggaattcgagtattcacaatgaggattttgttattataatttgattttgatattatcaataaaagtttagctgagactatgaacattgtggattttag |
36146473 |
T |
|
| Q |
210 |
tgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
36146474 |
tgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgaaaagttgtctattgagagtgagatgatga |
36146555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 28920005 - 28920287
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28920005 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaca--tcattctttaggtttttcaatttgagaattttgtgaattttttca |
28920102 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
28920103 |
atattggaaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagtgg-gactatgaacattgtggatt |
28920201 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28920202 |
ttagtgttgagatttcaatctgatcattgtcaatgggggttttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
28920287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 19056986 - 19056707
Alignment:
| Q |
11 |
cagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-caata |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
19056986 |
cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaa---tcattctttaggtttttcaatttgagaattttttgaattttttcaata |
19056890 |
T |
|
| Q |
110 |
ttgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatttta |
208 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||| |||||||||| ||||||| |
|
|
| T |
19056889 |
ttggaaatttgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactgtgaacattgtagatttta |
19056790 |
T |
|
| Q |
209 |
atgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
19056789 |
gtgttgagatgtcaatctgaccattatcaatgggaattttgtttaggtttgtcagaagttgtctattgagagtgagatgatga |
19056707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 291
Target Start/End: Original strand, 24088702 - 24088927
Alignment:
| Q |
70 |
ttaggtttttcaatttgagaatttt-gtgaatttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattat |
167 |
Q |
| |
|
|||||||||||||||| ||||||| || | |||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| | ||||||| |
|
|
| T |
24088702 |
ttaggtttttcaattttggaattttcgtaattttttcaaaattgggaattcaagcattcttaatgaggatttttttgttataatttgattatgatattat |
24088801 |
T |
|
| Q |
168 |
caataaaagcttagttgtgactat--gaacattgtggattttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaa |
265 |
Q |
| |
|
|||||| || || ||| |||||| | |||||||||||||| |||||||||||||||||| | | |||||||| ||||||||||| |||||||||||| |
|
|
| T |
24088802 |
caataagagttttgttaggactatatggacattgtggattttggtgttgagatgtcaatctgtccactgtcaatgagaattttgtttaggtttgtgagaa |
24088901 |
T |
|
| Q |
266 |
gttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||||| ||||||| ||||||||||| |
|
|
| T |
24088902 |
gttgtgtattgaggatgatatgatga |
24088927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 1841105 - 1841386
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatt-tttca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1841105 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa----tcattctttaggtttttcaatttgagaattttgtgaattgtttca |
1841200 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1841201 |
atattgggaattcgagcattcacaatgaggattttgttgttataattttattttgatattatcaataaaagtttagttgggactatgaacattgtggatt |
1841300 |
T |
|
| Q |
206 |
ttaatgttgagatgtcaatctgacaattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1841301 |
ttagtgttgagatgttaatctgaccattgtcaatggggattttgtttaggtttgtgagaagttgtctattgagagtgagatgatga |
1841386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 13948172 - 13948217
Alignment:
| Q |
246 |
tttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13948172 |
tttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
13948217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 14089379 - 14089424
Alignment:
| Q |
246 |
tttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14089379 |
tttgtttgggtttgtgagaagttgtctattgagagtgagatgatga |
14089424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 19083511 - 19083725
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaatttt-tca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19083511 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaa--tcattctttaggtttttcaatttgagaattttgtgaattttttca |
19083608 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagcttagttgtgactatgaacattgtggatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
19083609 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttatttatgactatgaacattgtggatt |
19083708 |
T |
|
| Q |
206 |
ttaatgttgagatgtca |
222 |
Q |
| |
|
||| ||||||| ||||| |
|
|
| T |
19083709 |
ttagtgttgagttgtca |
19083725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 19083725 - 19083772
Alignment:
| Q |
244 |
attttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19083725 |
attttgattgggtttgtgagaagttgtctattgagagtgagatgatga |
19083772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 6250 - 6468
Alignment:
| Q |
8 |
cagcagagatgcaagatcaatgatgagacgagagttggtaatgnnnnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttt-ca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6250 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttca |
6349 |
T |
|
| Q |
107 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgatttt-atattatcaataaaagctt--agttgtgactatgaacattgtgga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | || ||||||||||||||||||| |
|
|
| T |
6350 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaaagtttaatttatgactatgaacattgtgga |
6449 |
T |
|
| Q |
204 |
ttttaatgttgagatgtca |
222 |
Q |
| |
|
||||| ||||||| ||||| |
|
|
| T |
6450 |
ttttagtgttgagttgtca |
6468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 6468 - 6515
Alignment:
| Q |
244 |
attttgtttgggtttgtgagaagttgtctattgagagtgatatgatga |
291 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6468 |
attttgattgggtttgtgagaagttgtctattgagagtgagatgatga |
6515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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