View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0338_low_1 (Length: 426)
Name: NF0338_low_1
Description: NF0338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0338_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 416
Target Start/End: Complemental strand, 34915192 - 34914810
Alignment:
| Q |
30 |
ttaacaagagaaggaaattaataagtgttaaataatgcaggtcaaaacaaatgcaaagaacatttttacnnnnnnnnnnnnnnnngacgtaatgagaatt |
129 |
Q |
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| T |
34915192 |
ttaacaagagaaggaaattaataagtgttaaataatgcaggtcaacacaaatgcaaagaacatttttacttttttgttttt----gacgtaatgagaatt |
34915097 |
T |
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| Q |
130 |
ttgaataatcattagtgcatatagttttttctttgaggggtttagtgcatatagttctttaatttttatttcatatacgtaattagttatgttaatgcag |
229 |
Q |
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| T |
34915096 |
ttgaataatcattagtgcatatagttttttctttgaggggtttagtgcatatagttctttaatttttatttcatatacgtaattagttatgttaatgcag |
34914997 |
T |
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| Q |
230 |
gagtaacgctgcaagcaaattagttagagccgaagaaaccaaaaacgggagacaatcttttggtgtgtatagtcaaaaggtcgaannnnnnngagttgag |
329 |
Q |
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| T |
34914996 |
gagtaacgctgcaggcaaattagttagagccgaagaaaccaaaaacgggagacaatcttttagtgtgtatagtcaaaaggtcgaatttttttgagttgag |
34914897 |
T |
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| Q |
330 |
tatgtcatacaaactgagacagtataaataagaatttatatatatcggtacttcgtctctaactttatcatgagggggcaacagcta |
416 |
Q |
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| T |
34914896 |
tatgtcatacaaactgagacagtataaataagaatttatatatatcagtacttcgtctccaactttatcatgagggggcaacagcta |
34914810 |
T |
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