View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0340_high_10 (Length: 298)
Name: NF0340_high_10
Description: NF0340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0340_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 20989990 - 20989818
Alignment:
| Q |
54 |
cacagaacaaccgatttaaacaacaaaaactaacatccagcnnnnnnnttattaagccttagctttagcaaaagacatatgcctgcaagatagaaataga |
153 |
Q |
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| T |
20989990 |
cacagaacaaccgatttaaacaacaaaaactaacatccagcaaaaaaattattaagccttagctttagcaaaagacatatgcctgcaagatagaaataga |
20989891 |
T |
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| Q |
154 |
aaatctataacaaaggaaactctctcagacacataattttggtgcatgcaatatacaaaacaaataaacttct |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20989890 |
aaatctataacaaaggaaactctctcagacacataattttggtgcatgcaatatacaaaacaaataaacttct |
20989818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 21000137 - 21000047
Alignment:
| Q |
54 |
cacagaacaaccgatttaaacaacaaaaactaacatccagcnnnnnnnttattaagccttagcttt-agcaaaagacatatgcctgcaagat |
144 |
Q |
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||||||||||| | |||||||||||||||| ||||| |||| | |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21000137 |
cacagaacaactggtttaaacaacaaaaaccaacattcagcaaaaaa-tcattaagccttagcttttagcaaaagacatatgcctgcaagat |
21000047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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