View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0340_high_19 (Length: 248)
Name: NF0340_high_19
Description: NF0340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0340_high_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 401459 - 401684
Alignment:
| Q |
23 |
catcatagaccaggtgcacagttcaaacctgtagaagtttaactaaagtagatcttgcttggctaatgcgcccactttttctgcaaagagaagcaaaatt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401459 |
catcatagaccaggtgcacagttcaaacctgtagaagtttaactaaagtagatcttgcttggctaatgcgcccactttttctgcaaagagaagcaaaatt |
401558 |
T |
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| Q |
123 |
gagccatgtttcaatgtcttcagctggtggcagcacaagtgttctaacagccaaaagtgcctgccaaacctgccaaaaagcatcacaaagtcagaggaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401559 |
gagccatgtttcaatgtcttcagctggtggcagcacaagtgttctaacagccaaaagtgcctgccaaacctgccaaaaagcatcacaaagtcagaggaag |
401658 |
T |
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| Q |
223 |
ggcattaaaagccccaatttgttaaa |
248 |
Q |
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|| ||||||||||| ||||||||||| |
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| T |
401659 |
ggaattaaaagcccaaatttgttaaa |
401684 |
T |
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