View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0340_high_2 (Length: 587)
Name: NF0340_high_2
Description: NF0340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0340_high_2 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 29 - 507
Target Start/End: Complemental strand, 37799507 - 37799029
Alignment:
| Q |
29 |
agtatccttacacttttggaccataggttggagggaaatgctgacattgaggaagtgactgaaatgataaaagttgcttcttggtgtgtccaagaaaatg |
128 |
Q |
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| T |
37799507 |
agtatccttacacttttggaccataggttggagggaaatgctgacattgaggaagtgactgaaatgataaaagttgcttcttggtgtgtccaagaaaatg |
37799408 |
T |
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| Q |
129 |
aaactcagaggccaaccatgcgtcaggcagttcaaattctcgaggggaccttgaatgtgaatttgccaccaattccaagattcaatcaagtgtttgtaga |
228 |
Q |
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| T |
37799407 |
aaactcagaggccaaccatgcgtcaggcagttcaaattctcgaggggaccttgaatgtgaatttgccaccaattccaagattcaatcaagtgtttgtaga |
37799308 |
T |
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| Q |
229 |
taactaagagaattttctctaccaaattcacaggccaaaagatatgcttcaacatcttctcaggccaaaagcaatatctcatcatctagcttcaagtctt |
328 |
Q |
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| T |
37799307 |
taactaagagaattttctctaccaaattcacaggccaaaaggtatgcttcaacatcttctcaggccaaaagcaatatctcatcatctagcttcaagtctt |
37799208 |
T |
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| Q |
329 |
tgttagaaaattaggatggtttattg-ctctcttgttagctgtgactgatnnnnnnnntatgtcatcttttgattttattgtaatgtatggtttgaataa |
427 |
Q |
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| T |
37799207 |
tgttagaaaattaggatggtttattgtctctcttgttagctgttactgat-taaaaaatatgtcatcttttgattttattgtaatgtatggtttgaataa |
37799109 |
T |
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| Q |
428 |
tgagattctctttccatagctattattgtattaattagtaatgatatagaaggatggtttggctttgtgacagatatgat |
507 |
Q |
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| T |
37799108 |
tgagattctctttccatagctattattgtattaattagtaatgatatagagggatggtttggctttgtgacagatatgat |
37799029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 37766251 - 37766417
Alignment:
| Q |
41 |
cttttggaccataggttggagggaaatgctgacattgaggaagtgactgaaatgataaaagttgcttcttggtgtgtccaagaaaatgaaactcagaggc |
140 |
Q |
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| T |
37766251 |
cttttggaccctaggttgcagggaaatgcggacattgaagaggttgcgcgaataattaaagtcgcttcttggtgtgtccaagacaatgaaaatcaaaggc |
37766350 |
T |
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| Q |
141 |
caaccatgcgtcaggcagttcaaattctcgaggggaccttgaatgtgaatttgccaccaattccaag |
207 |
Q |
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| T |
37766351 |
caacaatgggtcaggtagttcaaattcttgagggaattttggaagtgaatttgccaccaattccaag |
37766417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 424
Target Start/End: Complemental strand, 8571467 - 8571437
Alignment:
| Q |
394 |
cttttgattttattgtaatgtatggtttgaa |
424 |
Q |
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| T |
8571467 |
cttttgattttattgtaatgtatggtttgaa |
8571437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 29448366 - 29448316
Alignment:
| Q |
394 |
cttttgattttattgtaatgtatggtttgaataatgagattctctttccat |
444 |
Q |
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| T |
29448366 |
cttttaatttttctgtaatgtatggtttgaataatgagattatctttccat |
29448316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 16500 - 16569
Alignment:
| Q |
102 |
ttgcttcttggtgtgtccaagaaaatgaaactcagaggccaaccatgcgtcaggcagttcaaattctcga |
171 |
Q |
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| T |
16500 |
ttgcttcttggtgtgttcaagatgatgaagctcataggccatcgatgggtcaggtagttcaaatcctcga |
16569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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