View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0340_high_3 (Length: 519)
Name: NF0340_high_3
Description: NF0340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0340_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Original strand, 3639489 - 3639906
Alignment:
| Q |
9 |
cataggatcatgtacaaatttgttggacgtcacagtgaaggtgaaaccataaaattagtaggctacataggaggctgaggtcctnnnnnnnccgcacagg |
108 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3639489 |
cataagatcatgtacaaatttgttggatgtcacagtgaaggtgaaaccataaaattagtaggctacataggaggctgaggtcctaaaaaaaccgcacagg |
3639588 |
T |
|
| Q |
109 |
attccggaaatacacatctgcacagagnnnnnnntcgtgtttttgtctgaaatacaccttcagacagcacaaaaactgtctgtttccgatatctactttc |
208 |
Q |
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| T |
3639589 |
attccggaaatacacatctgcacagagaaaaaaatcgtgtttttgtctgaaatacaccttcagacagcacaaaaactgt--gtttccgatatctactttc |
3639686 |
T |
|
| Q |
209 |
aaagtgctttcggtggtgggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639687 |
aaagtgctttcggtggtgggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcattt |
3639786 |
T |
|
| Q |
309 |
ggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctagaaaggtctagaagtaaatgagagacttggcat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639787 |
ggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctagaaaggtctagaagtaaatgagagacttggcat |
3639886 |
T |
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| Q |
409 |
taaatgtaagtagataatat |
428 |
Q |
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| T |
3639887 |
taaatgtaagtagataatat |
3639906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 3648517 - 3648583
Alignment:
| Q |
244 |
gtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcatatcatttgg |
310 |
Q |
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|||||||||| ||| ||||| ||||||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
3648517 |
gtgctagggttgaccctgttgaatattgtgaagcctaattcttgtaatcacctttcatatcatttgg |
3648583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 43145841 - 43145913
Alignment:
| Q |
305 |
atttggtccattgaactaattaagtgttaggtccattttagtttgacttttgtagtccaaagaaagttctaga |
377 |
Q |
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||||||||||||| ||||| ||||||| | |||||||| | || | | ||||||||||||||||||||||| |
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| T |
43145841 |
atttggtccattggcctaatcaagtgttggatccattttggattaagtaatgtagtccaaagaaagttctaga |
43145913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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