View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0340_low_1 (Length: 686)

Name: NF0340_low_1
Description: NF0340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0340_low_1
NF0340_low_1
[»] chr1 (8 HSPs)
chr1 (241-384)||(12541133-12541275)
chr1 (433-517)||(12541275-12541359)
chr1 (241-356)||(12534973-12535092)
chr1 (249-300)||(47569740-47569791)
chr1 (249-313)||(28239767-28239831)
chr1 (366-409)||(12531936-12531979)
chr1 (17-61)||(45570824-45570868)
chr1 (253-299)||(14508386-14508432)
[»] chr6 (1 HSPs)
chr6 (256-315)||(384134-384193)
[»] chr2 (1 HSPs)
chr2 (249-291)||(16375795-16375837)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 241 - 384
Target Start/End: Original strand, 12541133 - 12541275
Alignment:
Q  241 gaatattctagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatagctttgcttccaagtgtgtgtactgg 340  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||     
T  12541133 gaatattgtagattacatgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttctacatctttgcttccaagtgtgtgcactgc 12541232  T
Q  341 aaaataataatgttttaattaatgctattctaatttgatcatgt 384  Q
    ||||||||||||  ||||||||||  ||||||||||| ||||||    
T  12541233 aaaataataatg-cttaattaatgtaattctaatttgttcatgt 12541275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 433 - 517
Target Start/End: Original strand, 12541275 - 12541359
Alignment:
Q  433 tgtttcttgttttatattttctcttcaataatgccttatgattgtcttgacttgtgacattttcttcggatggatattactctta 517  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||    
T  12541275 tgtttcttgttttatattttctctttgattatgccttatcattgtcttgccttgtgacattttctttggatggatcttactctta 12541359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 12535092 - 12534973
Alignment:
Q  241 gaatattctagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttcta----tagctttgcttccaagtgtgtgta 336  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||| |||||||  || |||||    ||  |||||||||||||||||| |    
T  12535092 gaatattgtagactacttgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgca 12534993  T
Q  337 ctggaaaataataatgtttt 356  Q
    || ||||||||  |||||||    
T  12534992 ctagaaaataacgatgtttt 12534973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 47569740 - 47569791
Alignment:
Q  249 tagattacatgctttctagttttctaatttaaggaccatgcttctgctttta 300  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  47569740 tagattacatgctttctagttttctaatttaaggactatgtttttgctttta 47569791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 28239767 - 28239831
Alignment:
Q  249 tagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctat 313  Q
    |||||||||||||||||||||| |||||||||||||  || || |||||||| || |||||||||    
T  28239767 tagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat 28239831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 12531979 - 12531936
Alignment:
Q  366 tattctaatttgatcatgtctgcgtatttggcccatatatgttc 409  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  12531979 tattctaatttgatcgtgtctgcgtatttggccgatatatgttc 12531936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 45570824 - 45570868
Alignment:
Q  17 acatcatcattaacaaaacaaaccaactgaaaaatttaaaataaa 61  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||    
T  45570824 acatcatccttaacaaaacaaaccaactgacaaatttgaaataaa 45570868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 14508432 - 14508386
Alignment:
Q  253 ttacatgctttctagttttctaatttaaggaccatgcttctgctttt 299  Q
    |||||||||||||| |||||||||| |||||| |||||| |||||||    
T  14508432 ttacatgctttctatttttctaattaaaggactatgcttttgctttt 14508386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 384193 - 384134
Alignment:
Q  256 catgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatag 315  Q
    |||||||||||||||||||||||| | || ||||||||||||||| || |||||||||||    
T  384193 catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctatag 384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 16375795 - 16375837
Alignment:
Q  249 tagattacatgctttctagttttctaatttaaggaccatgctt 291  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||    
T  16375795 tagattacatgctttgtagttttctaattaaaggatcatgctt 16375837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 318 times since January 2019
Visitors: 2755